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6 protocols using anti timp2

1

Antibody-Based Protein Extraction from Patient Tissues

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Experiments were performed as previously described [14 (link)]. If not declared otherwise, 3 days before harvesting, cells were transfected with siRNA as indicated. The following antibodies were used: anti-KMT9α (#27630, lot 20062017, Schüle Lab), anti-KMT9β (#28358, lot 27022018, Schüle Lab), anti-H4K12me1 (#27429, lot 27062017, Schüle Lab); anti-H4 (ab31830, lot GR3204774-2, abcam); anti-Tubulin (alpha tubulin, #T6074, lot 03714804 V, Sigma), anti-LMNA (sc-20680, lot F2607, Santa Cruz); anti-GAPDH (MAB574, lot 3273148, R&D systems); anti-SMARCA2 (NB100-55308; lot A1; Novus biologicals); anti-TIMP2 (CST#5738, lot 3, Cell signaling); anti-SOD2 (CST#13194, lot 1, Cell signaling); anti-YES1 (#PA5-80243, lot VA2919193, Invitrogen). Proteins from patient tissues were extracted using the Minilys homogenizer (Bertin instruments) and RIPA buffer (1 mM EDTA, 50 mM Tris–HCL pH7.5, SDS 0.1%, NaCl 150 mM, NP-40 1%, Na deoxycholate 1%, protease inhibitor cocktail EDTA-free). Samples were cycled for 15 s at top speed.
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2

Evaluating Baicalein's Anti-Inflammatory Effects

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Fetal bovine serum (FBS), penicillin and streptomycin were ordered from Gibco. Baicalein, SB203580 and anisomycin were ordered from Sigma. Dulbecco's modified Eagle's medium (DMEM) was purchased from Invitrogen. Anti-p38, anti-Phospho-p38 (Thr180/Tyr182), anti-MMP-2, anti-MMP-9, anti-TIMP-1 and anti-TIMP-2 antibodies were purchased from Cell Signaling. Anti-β-actin was purchased from Santa Cruz.
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3

Western Blot Analysis of Protein Expression

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Protein lysates were prepared using RIPA lysis buffer (Thermo Fisher Scientific), and protein concentration was determined by BCA Protein Assay Kit (Thermo Fisher Scientific). Protein lysates were separated by SDS-PAGE and transferred onto PVDF membrane (Bio-Rad). After blocking, the blot was incubated with primary antibody at 4 °C overnight, followed by incubation with secondary antibody. Chemiluminescence signal was visualized using SuperSignal Pico PLUS chemiluminescent Substrate (Thermo Fisher Scientific). The following primary antibodies were used in this study: anti-GM130 (1:1000, #12480); anti-CD54 (1:1000, #4915); anti-Annexin V (1:1000, #8555); anti-CD9 (1:1000, #13174); anti-TIMP2 (1:1000, #5738); anti-TIMP3 (1:1000, #5673); anti-GAPDH (1:1000, #5174); anti-VEGFR2 (1:1000, #9698); anti-ERK (1:1000, #4695); anti-p-ERK (1:1000, #4370); anti-MMP2 (1:1000, #87809); anti-MT1-MMP (1:1000, #13130) antibodies were purchased from Cell Signaling technologies (Beverly, MA, USA).
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4

Western Blot Analysis of Adipose and Liver Proteins

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Western blots of proteins in the adipose and liver were performed as previously described (Berg & Scherer, 2005 (link); Collins et al., 2016 (link); Hotamisligil, 2006 (link)). Primary antibodies for anti-NOV/CCN3, anti-IL-6, anti-pP65, anti-P65, anti-MMP9, anti-MMP2, anti-MT1-MMP, anti-TIMP1, anti-TIMP2, anti-PRDM16, anti-PGC-1α, anti-SOD1, anti-TWIST1, anti-SIRT1, anti-Mfn1, anti-FGF21, anti-CREG1, anti-UCP1, anti-pAKT, anti-AKT, and anti-β-actin were purchased from Cell Signaling Technology, Danvers, MA, USA. The anti-pIR tyr972 antibody was purchased from Millipore, Bedford, MA, USA. The anti-HO-1 antibody was purchased from Enzo Life Sciences, Farmingdale, NY, USA. The secondary antibodies labeled with either IRDye 680 or IRDye 800 were purchased from LICOR Biosciences, Lincoln, NE. Immunoreactivity was visualized and quantified by infrared scanning in the Odyssey system (LICOR Biosciences, Lincoln, NE) and quantified after normalization with β-actin and expressed as arbitrary units (AU).
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5

Western Blot Analysis of Molecular Targets

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Western blot analysis was performed as described previousely [44 (link)]. The following antibodies were used for western blot: rabbit anti-PinX1 (Novus Biologicals); rabbit anti-MMP-2, anti-MMP-9, anti-TIMP-1, anti-TIMP-2 (all from Cell Signaling Technology); rabbit anti-NF-κB-p65 (Santa Cruz Biotechnology); mouse anti-β-actin (Cell Signaling Technology); Infrared IRDye-labeled secondary antibody (LI-COR, NE, USA) was applied to the blot for 2 hour at room temperature, the signals were detected with Odyssey Infrared Imaging system (LI-COR).
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6

Immunoblotting Protein Expression Analysis

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Immunoblotting was performed using whole-cell lysates as previously described [47 (link)]. The following primary antibodies were used: Anti-FLAG (M2, Sigma), anti-α-tubulin (Sigma), anti-Pten (Cell Signaling Technology, Danvers, MA, USA), anti-Timp2 (Cell Signaling Technology), anti-Ezh1 (Santa Cruz), and anti-Gapdh (Hytest, Turku, Finland).
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