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9 protocols using bluing solution

1

H&E Staining of Tissue Samples

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H&E staining was done by UCSD Tissue Technology Shared Resource (TTSR) on a Thermo Gemini AS Stainer. Tissues were baked at 60°C for 1 hr and transferred to solutions in the following order: Clearite-3 (ThermoFisher), 100% EtOH, 95% EtOH, diH2O, hematoxylin (ThermoFisher), diH2O, Clarifier 1 (ThermoFisher), diH2O, Bluing Solution (ThermoFisher), diH2O, 70% EtOH, Eosin-Y (ThermoFisher), 70% EtOH, 95% EtOH, 100% EtOH, Clearite-3, mounting medium (VWR).
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2

Hematoxylin and Eosin Staining Protocol

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hematoxylin and eosin (H&E) staining was done by UCSD Tissue Technology Shared Resource (TTSR) on a Thermo Gemini AS Stainer. Tissues were baked at 60°C for 1 hours and transferred to solutions in the following order: Clearite-3 (Thermo Fisher), 100% EtOH, 95% EtOH, diH2O, hematoxylin (Thermo Fisher), diH2O, Clarifier 1 (Thermo Fisher), diH2O, Bluing Solution (Thermo Fisher), diH2O, 70% EtOH, Eosin-Y (Thermo Fisher), 70% EtOH, 95% EtOH, 100% EtOH, Clearite-3, mounting medium (VWR).
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3

H&E Staining Protocol for Frozen Tissue Sections

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H&E staining was performed on frozen sections of TA and hearts of AAV-Mical2 H11Cas9 and AAV-SHAM H11Cas9 mice. Frozen sections were fixed in 4% PFA for 15 min, rinsed in PBS 2 min×3. Sections were stained in Harris hematoxylin solution (Sigma-Aldrich) for 4 min, followed by a washing step in running tap water for 2 min. Samples were differentiated in 1% acid alcohol for 1 min, followed by a washing step in running tap water for 1 min. The samples were put in bluing solution (Thermo Fisher) solution for 1 min and washed in running tap water for 1 min. Counterstain in eosin solution (0,1% erithrosin extra bluish Sigma-Aldrich in 70% ethanol) was done for 1 min. Dehydration steps through 95% alcohol and 2 changes of absolute alcohol for 3 min each. Lastly, samples were cleared in 2 changes of xylene, 5 min each and mounted with DPX mountant (Sigma).
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4

Histological Analysis of Murine Organs

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At the termination of the study, mice were sacrificed, major organs and tumors harvested and fixed in 4% paraformaldehyde at 4 °C for 24 h. Organs and tumors were then immersed in 70% ethanol, embedded in paraffin, and sliced at 5 μm thickness using a Leica cryo-microtome (RM2255, Leica, GE). These sections were stained in hematoxylin (Sigma-Aldrich) for 2 min, rinsed with water, and transformed in 1% HCl acid/alcohol for 30 s. The slices were washed and immersed in bluing solution (Thermo Fisher Scientific) for 1 min, washed with water and rinsed in 10 dips of 95% ethanol. The slides were then counterstained in eosin by dipping into ethanol diluted eosin (Thermo Fisher Scientific) solution (ethanol:eosin = 1:5) for 20 seconds, dehydrated using 95% alcohol, then xylene for 5 min, each. Finally, the slides were mounted with xylene-based mounting medium (Permount, Sigma-Aldrich) and imaged using a Nanozoomer system (Hamamatsu, Japan).
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5

Histological Analysis of Mouse Organs

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At the termination of treatments, the mice for each group were sacrificed, and the harvested organs were fixed using 4% paraformaldehyde at 4 °C overnight, then immersed in 70% ethanol, embedded in paraffin, and sliced at 5 μm thickness using a Leica cryo-microtome (RM2255, Leica, GE). These sections were stained in hematoxylin (Sigma-Aldrich) for 2 min, rinsed with water, and transformed in 1% HCl acid/alcohol for 30 s. Then the slices were washed and immersed in bluing solution (Thermo Fisher Scientific) for 1 min, washed with water and rinsed in 10 drops of 95% ethanol. The slides were then counterstained in eosin by dipping into ethanol diluted eosin (Thermo Fisher Scientific) solution (ethanol:eosin = 1:5) for a few seconds, dehydrated using 95% alcohol, then xylene for 5 min, each. Finally, the slides were mounted with xylene-based mounting medium (Permount, Sigma-Aldrich) and imaged using a Nanozoomer system. (Hamamatsu, Japan).
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6

Histological Analysis of Tissue Samples

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After completing the study, we fixed the excised tissues in 4% paraformaldehyde overnight at 4 °C, immersed them in 70% ethanol, embedded them in paraffin, and then sliced at 5 μm thickness using a Leica cryo-microtome (Leica RM2255). We stained these sections in undiluted hematoxylin (Sigma-Aldrich, USA) for 2 min, rinsed in running water, and differentiated in 1% HCl acid/alcohol for 30 s. We then washed these and immersed them in bluing solution (Fisher, USA) for 1 min, washed in running water and rinsed in 10 dips of 95% alcohol. After this, we counterstained the slides in eosin by dipping into 1:5 ethanol diluted eosin solution (Fisher) for less than 30 s, dehydrated through 95% alcohol, and then xylene for 5 min each. We mounted slides with xylene based mounting medium (Permount, Sigma-Aldrich, USA) and imaged using Nanozoomer (Hamamatsu, Japan).
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7

Tumor Xenograft Histological Analysis

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On Day 14 after treatment initiation, mice were euthanized by CO2 gas, and the tumors were excised and frozen in OCT cryoprotective fixing medium. Tumor xenografts were sliced at 10 μm in Leica cryomicrotome. Sections were stained in undiluted hematoxylene (Sigma-Aldrich, USA) for two min, rinsed in running water, and differentiated in 1% HCl acid/alcohol for 30 sec. They were then washed and immersed Bluing solution (Fisher, USA) for 1 min, washed in running water and rinsed in 10 dips of 95% alcohol. After this, slides were counterstained in eosin by dipping into 1:5 ethanol-diluted Eosin solution (Fisher) for a total of less than 30 sec, dehydrated through 95% alcohol, absolute alcohol, and xylene for 5 min each. Slides were mounted with xylene based mounting medium (Permount, Sigma) and imaged by Nanozoomer (Hamamatsu, Japan).
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8

Tumor Xenograft Histological Staining

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Tumor xenografts were frozen in OCT cryoprotective fixing medium, sliced at 5 µm thickness by Leica cryomicrotome. Sections were stained by undiluted hematoxylene (Sigma-Aldrich, USA) for two minutes, rinsed in running water, and differentiated in 1% HCl acid/alcohol for 30 sec. They were then washed and immersed into Bluing solution (Fisher, USA) for 1 min, washed in running water and rinsed in 10 dips of 95% alcohol. After this, slides were counterstained in eosin by dipping into 1:5 ethanol-diluted Eosin solution (Fisher) for a total of less than 30 sec, and dehydrated through 95% alcohol, absolute alcohol, and xylene for 5 minutes each. Slides were mounted with xylene based mounting medium (Permount, Sigma) and imaged by Nanozoomer (Hamamatsu, Japan) digital slide scanner.
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9

Histological Analysis of Nanoparticle-Treated Tumor

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After 24 h of nanoparticle administration tumor tissues were excised by lobectomy and processed for ex vivo histological analysis. Excised tissues were fixed in 4% paraformaldehyde overnight at 4 °C and immersed in 70% ethanol, and then embedded in paraffin, sliced at 5 μm thickness in a Leica microtome (Leica RM2255). Sections were stained in undiluted hematoxylin (Sigma-Aldrich, USA) for 2 min, rinsed in running water, and differentiated in 1% HCl acid/alcohol for 30 s. They were then washed and immersed in bluing solution (Fisher, USA) for 1 min, washed in running water and rinsed in 10 dips of 95% alcohol. After this, slides were counterstained in eosin by dipping into 1:5 ethanol diluted eosin solution (Fisher) for a total of less than 30 s, dehydrated through 95% alcohol, absolute alcohol, and xylene for 5 min each. Slides were mounted with xylene based mounting medium (Permount, Sigma-Aldrich, USA) and imaged using a Nanozoomer (Hamamatsu, Japan).
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