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Waters fraction collector 3

Manufactured by Waters Corporation
Sourced in United States

The Waters Fraction Collector III is a laboratory equipment designed to collect fractions of a liquid sample. It is capable of precisely controlling the timing and volume of each fraction, ensuring accurate sample collection. The device operates automatically and can be programmed to meet the specific requirements of various analytical techniques.

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8 protocols using waters fraction collector 3

1

Ethanol Fractionation and HPLC Purification of DPP-IV Inhibitors

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Firstly, pure ethanol was added to the R. philippinarum hydrolysates (RPHs) to achieve a concentration of 60% (v/v), and left at 4 °C for 12 h. The mixture was then centrifuged, precipitated and the supernatant was collected and freeze-dried for further use.
The fraction displaying the highest DPP-IV inhibitory activity following ethanol fractionation was further separated by RP-HPLC using a Waters 2545-2489 HPLC system (Waters Corp., Milford, MA, USA), and a Waters Xbridge Prep C18 (5 μm, 19 × 150 mm) was used for separation. Elution was carried out with 2% B for 3 min, a linear gradient from 2 to 35% B for another 9 min, and kept at 35% B for 4 min, with a flow rate of 10 mL/min (eluting solvent A: 0.1% TFA in pure water; B: 0.1% TFA in methanol). The detection wavelength was set at 220 nm for all compounds. The HPLC profile is shown in Figure 2A. In total, eight fractions (M1–M8) were collected by the Waters Fraction Collector III (Waters Corp.).
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2

Enzymatic Oxidation Kinetics of AsqJ Variants

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Reaction mixtures containing 33 µM purified AsqJ_wt (AsqJ_V72I, AsqJ_V72K, or, AsqJ_F139I), 200 µM of the synthesized substrate2 (link), 100 µM FeSO4, 2.5 mM α-ketoglutarate, 4 mM ascorbic acid, and 50 mM Tris hydrochloride were incubated at 30 °C for 20 s, 1 min, 2 min, 5 min, 10 min, 30 min, and 60 min. The reaction was stopped by adding 10% (v/v) of 3 M trichloroacetic acid, and samples were centrifuged at 10,000 ×  g for 10 min. All traces were monitored at 280 nm using a Dionex UltiMate 3000 HPLC system coupled with a Thermo LCQ fleet in combination with a Waters 1525 binary HPLC pump, X-Bridge Prep C18 column (5 µm, 10 × 250 mm), Waters 2998 PDA detector and Waters Fraction Collector III (Waters).
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3

Cyanobacterial Extract Fractionation

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The LEGE-NPL (natural products library) solid inventory is composed of crude extracts. Thus, freeze-dried biomass was extracted three times with MeOH, with a sonication step of 5 min in between extractions, and was filtered and concentrated at 30 °C, using a rotary evaporator. The yields of extraction are described in the Supplementary Material (Figure S1). The extracts were then fractionated by reverse-phase HPLC in a Waters Alliance e2695 Separations Module instrument, coupled to a photodiode array detector (Waters 2998 PDA) and an automatic Waters Fraction Collector III (Waters, Mildford, MA, USA). Each crude was injected at 40 mg mL−1 (500 µL; 1 mL loop) and separated on an ACE 10 C8 column (50 ×10 mm, ACE, Reading, UK), using a H2O:MeCN gradient (Table 4). Hence, each cyanobacterial extract was chromatographed into eight fractions (4 mL final volume, named A–H) into 48-deep well plates (Riplate, Ritter, Schwabmünchen, Germany), which were then dried on a CentriVap Concentrator (LabConco, Kansas City, MO, USA). These fractions were solubilized in 500 µL of DMSO and transferred to 96-deep well microplates (Nest Scientific, Woodbridge Township, NJ, USA) and stored at −80 °C, thus forming the LEGE-NPL liquid library (mother plates).
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4

Fractionation of PKC Oligosaccharides

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In order to separate the PKC oligosaccharides based on size, 1.0 g of freeze-dried extract was dissolved in 5 mL of ultrapure water. The reconstituted extract was then filtered through a 0.22 micron syringe filter before being fed into a chromatography column (2.5 × 100 cm) packed with Bio-gel P-2, Fine gel (Bio-Rad Laboratories, Hercules, CA, USA). Using a perista pump (Atto Corporation, SJ-1211II-H, Tokyo, Japan), sample elution was carried out using degassed ultrapure water at a flowrate of 1.1 mL/min. Fractions were collected using Waters fraction collector III (Waters Corporation, Milford, MA, USA). The quantity of each fraction collected per run was 2 mL. Each fraction was then freeze dried and stored in a −80 °C freezer until required.
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5

Reversed-Phase HPLC Purification of Peptides

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Purification was performed via reversed-phase high-performance liquid chromatography (HPLC) using a BEH130 Prep C18 10-μm column (XBridge, Waters Corporation). Crude peptides were dissolved in Milli-Q water containing 0.1% (v/v) TFA and were filtered (0.20-μm filter, Corning Inc.) before HPLC injection. The products were subjected to an elution gradient [Quaternary Gradient Module (Waters 2545), Waters Corporation] of 100% solvent A [0.1% (v/v) TFA] to 30% solvent A within 60 min; solvent B consisted of acetonitrile with 0.1% (v/v) TFA. Fractions were detected using ultraviolet-visible detection at 214 nm (Waters 2489, Waters Corporation) and collected (Waters Fraction Collector III, Waters Corporation). The collected fractions were examined by electrospray ionization–mass spectrometry (LCQ Advantage Mass Spectrometer System, Thermo Finnigan) with an autosampler system (Surveyor Autosampler, Thermo Finnigan). Pure fractions were combined and lyophilized.
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6

Peptide Purification via HPLC

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Purification was performed via reverse-phase HPLC using a BEH130 Prep C18 10 μm column (XBridge, Waters Corporation, Milford, MA). Crude peptides were dissolved in Milli-Q water containing 0.1 % (by volume) TFA and were filtered (0.20 μm filter, Corning, Inc., Corning, NY) before HPLC injection. Products were subjected to an elution gradient (Quaternary Gradient Module (Waters 2545), Waters Corporation) of 100% Milli-Q water with 0.1 %-vol TFA to 40% Milli-Q water with 0.1 %-vol TFA and 60 % acetonitrile with 0.1 %-vol TFA within 60 min. Fractions were detected using UV-Vis detection at 214 nm (Waters 2489, Waters Corporation) and collected (Waters Fraction Collector III, Waters Corporation). The collected fractions were examined by ESI-mass spectrometry (LCQ Advantage Mass Spectrometer System, Thermo Finnigan, San Jose, CA) with an auto sampler system (Surveyor Autosampler, Thermo Finnigan). Pure fractions were combined and lyophilized followed by analytical UPLC-MS (Waters Xevo G2-S QTof, Waters Corporation) to demonstrate single species purity.
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7

Extraction and HPLC Fractionation of Bioactive Compounds from Dried Mushroom Powder

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Dried mushroom powder (100 mg) was extracted twice using the Precellys tissue homogenizer (Bertin Technologies, Rockville, MD) with 3 mL of methanol (MeOH) or ethyl acetate. The combined extract was evaporated using nitrogen gas and reconstituted in 1 ml of DMSO (for cell luciferase reporter assay) or 50 μl of ethyl acetate (for HPLC fractionation). The fractionation of WB mushroom was performed on a Waters 2695 HPLC system (Waters, Milford, MA) with a Restek (Bellefonte, PA) HPLC C18 column (4.6×150 mm, 5 μm particle size) and a Viva C18 guard cartridge (10×4.0 mm, 5 μm particle size). The mobile phase solvent A was 2% (v/v) acetic acid and solvent B was 0.5% acetic acid in water and acetonitrile (50:50, v/v). The gradient program was followed previous study24 (link) with minor modifications: 0–50 min, 10–55% B in A; 50–60 min, 55–100% B in A; 60–65 min, 100–10% B in A. The injection volume of mushroom extract was 10 μl. Simultaneous monitoring was performed at 254 nm at a flow rate of 1 ml/min. Fractions were collected 1.5 min by using Waters fraction collector III (All waters, Milford, MA).
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8

Isolation and Purification of Compound 10

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For structural elucidations, compound 10 was isolated and purified from a crude H. rhamnoides leaf extract. 9.46 grams of the extract was dissolved in 40 ml of water, centrifuged and the supernatant was applied onto a column (Chromaflex, 320 × 55 mm; Kimble-Chase Kontes, Vineland, NJ, USA) packed with Sephadex LH-20 gel equilibrated in water. Fractionation was performed with 10-50% aqueous methanol and 20-80% aqueous acetone with compound 10 eluting using 40-50% methanol. Methanol was evaporated from the main fractions containing compound 10 followed by their lyophilization, yielding 407 mg of fractions with compound 10. The purification was completed with reversed-phase highperformance liquid chromatograph (consisting of a Waters 2535 Quaternary Gradient Module, Waters 2998 Photodiode Array Detector, and a Waters Fraction Collector III; Waters Corporation, Milford, USA) equipped with a Gemini 10µ C18 110 Å (150 × 21.2 mm i.d., 10 µm, Phenomenex, Torrance, CA, USA) column using a flow rate of 8 ml min -1 and a gradient elution with acetonitrile and 0.1% aqueous formic acid as eluents. The total yield of purified compound 10 was 9.6 mg.
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