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6 protocols using p irs1 s1101

1

Hypoxia signaling protein regulation

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siHIF-1α experiments were performed using a forward transfection protocol (Lipofectamine 3000 Invitrogen). HIF-1α and siRNA was purchased from Santa Cruz Biotechnology (sc-44225 and sc-35316, respectively). PIM1 siRNA sequences were previously reported [58 ]. The following western blot antibodies were used for western blot: actin (BD Biosciences); and HA, HIF-1α (cat #: 3724S), HIF-1α-OH [P564] (cat #: 3434S), p-IRS1 [S1101] (cat #: 2385S), PHD2 (cat #: 4835S), PIM1 (cat #: 4835S), and ubiquitin (cat #: 3933S) (Cell Signaling Technologies). The p-HIF-1α [T455] antibody was generated by Pacific Immunology for western blot and IHC in this manuscript. The following antibodies were also used for IHC: CC3 (cat #: ab4051), CD31 (cat #: ab124432), HIF-1α (cat #: ab16066) and PIM1 (cat #: ab245417)(Abcam).
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2

Comprehensive Protein Expression Analysis

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Trypsin-EDTA (Cat# 25-053-CI), PBS (Cat# 21-031-CV), and laminin (Cat# 354232) were purchased from Corning. Recombinant EGF was purchased from Life Technologies (Cat# PHG0311). IGF was purchased from Sigma-Aldrich (Cat# I3769). PIM447 was purchased from Selleck Chemicals (Cat# S7985). AZD1208 was acquired from AdooQ Bioscience (Cat# A13203-750). DMSO was purchased from Thermo Fisher Scientific (Cat# 97064-724). Cycloheximide was purchased from VWR (Cat# 97064-724), and doxycycline was purchased from Sigma-Aldrich (Cat# D9891-5G). Recombinant myelin basic protein (MBP) was a gift from Dr. Greg Rogers, and recombinant ABI2 protein was purchased from Origene (Cat# TP300637). Radio-labeled ATP was purchased from Perkin Elmer (Cat# BLU502A). The antibody to ABI2 was purchased from Bethyl Laboratories (Cat# A302-499A-M). GFP (Cat# 2956S), HA (Cat# 3724S), HIF-1a (Cat# 14179S), p-IRS1 [S1101] (Cat# 2385S), PIM1 (Cat# 3247S), and WAVE2 (Cat# 3659S) antibodies were purchased from Cell Signaling Technology. The antibody for actin was purchased from BD Biosciences (Cat# 61656). PIM1 (Cat# ab75776) and Ki67 (Cat#ab833) antibodies used for immunohistochemistry were purchased from Abcam.
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3

Hypoxia signaling protein regulation

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siHIF-1α experiments were performed using a forward transfection protocol (Lipofectamine 3000 Invitrogen). HIF-1α and siRNA was purchased from Santa Cruz Biotechnology (sc-44225 and sc-35316, respectively). PIM1 siRNA sequences were previously reported [58 ]. The following western blot antibodies were used for western blot: actin (BD Biosciences); and HA, HIF-1α (cat #: 3724S), HIF-1α-OH [P564] (cat #: 3434S), p-IRS1 [S1101] (cat #: 2385S), PHD2 (cat #: 4835S), PIM1 (cat #: 4835S), and ubiquitin (cat #: 3933S) (Cell Signaling Technologies). The p-HIF-1α [T455] antibody was generated by Pacific Immunology for western blot and IHC in this manuscript. The following antibodies were also used for IHC: CC3 (cat #: ab4051), CD31 (cat #: ab124432), HIF-1α (cat #: ab16066) and PIM1 (cat #: ab245417)(Abcam).
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4

Quantification of Signaling Proteins

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Total protein for all experiments was collected using RIPA buffer (Sigma, St. Louis, MO) supplemented with 2% Protease Inhibitor Cocktail (Sigma, St. Louis, MO), 2% Phosphatase Inhibitor Cocktail 2 (Sigma, St. Louis, MO), and 2% Phosphatase Inhibitor Cocktail 3 (Sigma, St. Louis, MO). Protein content was assessed from total protein extracts using western immunoblotting with the Criterion apparatus system using 4-15% SDS-polyacrylamide gradient gels (all from Bio-Rad, Hercules, CA) and adjusted to GAPDH (Cat no. AB9484; AbCam, Cambrige, MA). Imaging of western blots was facilitated on the Odyssey infrared imaging system (LiCor, Lincoln, Nebraska). Antibodies against Total Akt (Cat no. 9272), p-S473 Akt (Cat no. 9271), Total IRS1 (Cat no. 2382S), p-S1101 IRS1 (Cat no. 2385), and mTOR (Cat no. 4517) were obtained from Cell Signaling Technology (Danvers, MA) The antibodies for PLIN2 (Cat no. NB110-40877) and PLIN3 (Cat no. NB110-40764) were obtained from Novus Biologicals (Littleton, CO).
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5

Antibody Sources for Signaling Pathway Analysis

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Antibodies against the following proteins were obtained from the following sources: alpha-tubulin (ab11304) from Abcam; DEPTOR (NBP149674) from Novus Biologicals; raptor (for IP, A300-553A) from Bethyl laboratories; PLD2 (sc-25513), PPARγ (sc-7196), C/EBPα (sc-61) and aP2 (sc-271529) from Santa Cruz Biotechnology; C/EBPβ (#3087), C/EBPδ (#2318), IRS-1 (#2382), pS636/639-IRS-1 (#2388), pS1101-IRS-1 (#2385), mTOR (#2972), raptor (#2280), Akt (#9272), pS473-Akt (#4051), pT308-Akt (#9275), S6K1 (#9202), pT389-S6K1 (#9234), S6 (#2217), pSer235/236-S6 (#4856), 4EBP1 (#9644), and pT37/46-4EBP1 (#2855) from Cell Signaling Technology. The PLD1 antibody was provided by Dr. Jie Chen from the University of Illinois at Urbana-Champaign16 (link). All secondary antibodies were from Jackson ImmunoResearch Laboratories Inc. [9,10-3H(N)]-oleic acid was from PerkinElmer. C8-PA (830842C) was from Avanti. All other reagents were from Sigma-Aldrich.
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6

Quantification of Signaling Proteins

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Total protein for all experiments was collected using RIPA buffer (Sigma, St. Louis, MO) supplemented with 2% Protease Inhibitor Cocktail (Sigma, St. Louis, MO), 2% Phosphatase Inhibitor Cocktail 2 (Sigma, St. Louis, MO), and 2% Phosphatase Inhibitor Cocktail 3 (Sigma, St. Louis, MO). Protein content was assessed from total protein extracts using western immunoblotting with the Criterion apparatus system using 4-15% SDS-polyacrylamide gradient gels (all from Bio-Rad, Hercules, CA) and adjusted to GAPDH (Cat no. AB9484; AbCam, Cambrige, MA). Imaging of western blots was facilitated on the Odyssey infrared imaging system (LiCor, Lincoln, Nebraska). Antibodies against Total Akt (Cat no. 9272), p-S473 Akt (Cat no. 9271), Total IRS1 (Cat no. 2382S), p-S1101 IRS1 (Cat no. 2385), and mTOR (Cat no. 4517) were obtained from Cell Signaling Technology (Danvers, MA) The antibodies for PLIN2 (Cat no. NB110-40877) and PLIN3 (Cat no. NB110-40764) were obtained from Novus Biologicals (Littleton, CO).
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