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7 protocols using anti inos

1

Immunofluorescent Staining of Brain Tissue

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Animals were anesthetized with a lethal dose of pentobarbital, and the brains were perfused via the ascending aorta with ice-cold phosphate-buffered saline followed by cold 4% paraformaldehyde. Tissues were deep-frozen on dry ice, serial 10 μm coronal sections were prepared, and immune-fluorescent stainings were performed as previously described (30). The following antibodies were used: mouse anti-NeuN (1:200, Chemicon), rabbit anti-Iba1 (1:220, Wako), anti-iNOS (1:1000, Novus biologicals), anti-β amyloid (1:800, BioLegend). Goat anti-rabbit Alexa-fluor 488 (1:200, Invitrogen), goat anti-rat Alexa-fluor 488 (1:200, Invitrogen), and goat anti-mouse Alexa-fluor 555 (1:200, Invitrogen) were used as secondary antibodies where appropriate. Nuclear counterstain was performed using DAPI (Vector Laboratories).
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2

Spinal Cord Tissue Immunostaining and Analysis

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Animals were anesthetized with pentobarbital and perfused with ice-cold PBS followed by cold 4% paraformaldehyde. Spinal cords were placed in OCT and deep frozen in dry ice. Serial 10 μm longitudinal sections of spinal cords were prepared, and immunofluorescence stainings were performed as previously described (59 (link)). The following antibodies were used: anti-CD3 (Bio-Rad Laboratories, MCA1477), anti-IBA1 (Fujifilm Wako, 019-19741), anti-iNOS (Novus Biologicals, NBP2-22119), anti-NEUN (MilliporeSigma, MAB377), anti-APC (Ab-7, Calbiochem, OP80), anti-MDA (Abcam, ab6463), anti-GFAP (Dako, Z0334), anti-NG2 (MilliporeSigma, AB5320), anti-MPB (MilliporeSigma, MAB386), and anti-NF M (Chemicon International, AB1987). Goat anti–rabbit Alexa Fluor 488 (Invitrogen, Thermo Fisher Scientific, A11034), goat anti–mouse Alexa Fluor 488 (Invitrogen, Thermo Fisher Scientific, A11001), goat anti–rabbit Alexa Fluor 555 (Invitrogen, Thermo Fisher Scientific, A27039), goat anti–rat Alexa Fluor 555 (Invitrogen, Thermo Fisher Scientific, A21434), and goat anti–mouse Alexa Fluor 555 (1:200, Invitrogen, Thermo Fisher Scientific, A28180) were used as secondary antibodies appropriately. Nuclear counterstain was performed using DAPI (Vector Laboratories). Bielschowsky silver impregnation (for axons) and Gold-Black (for myelin) staining were performed as previously described (60 (link)).
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3

Protein Expression Analysis in Cells

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The protocol has been described previously [12 (link)]. Proteins of interest were detected using anti-iNOS (1:1000, Novus), anti-eNOS (1:1000, Abcam), anti-alkaline phosphatase (ALP; 1:1000, Abcam), anti-runt-related transcription factor 2 (Runx2; 1:1000, Abcam), anti-peroxisome proliferator-activated receptor (PPAR)γ (1:1000, Abcam), anti-p-JNK (1:1000, Abcam), or anti-JNK (1:1000, Abcam) antibodies, while β-actin was detected with anti-β-actin antibody (1:2000, Abcam) as a control.
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4

Immunohistochemical Analysis of Lung Samples

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Human lung samples from donors and COPD patients were used. The study complied with the Declaration of Helsinki, and the tissue donation protocol was approved by the ethics committee of the faculty of medicine at Justus-Liebig University of Giessen, Germany. Immunohistochemical staining was performed as reported previously [25 (link)] with subtle modifications. Primary antibodies were used as follows: CD68 (Cat#ab955, Abcam, Cambridge, UK; 1:200); CD206 (Cat#ab64693, Abcam, Cambridge, UK; 1:100), anti-iNOS (Cat#NB300–605, Novus Biologicals, Littleton, CO, USA; 1:250), phospho p42/p44 (Cat#4370, Cell Signaling Technology, Danvers, MA, USA; 1:200).
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5

Western Blot Antibody Panel for Immune Response

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Primary antibodies for western blot were as follows: anti-MD2 (rabbit polyclonal, Abcam, 1:500), anti-TLR4 (rabbit polyclonal, Santa Cruz, 1:200), anti-GFAP (rat monoclonal, Invitrogen/Life Technologies, 1:1000), anti-Iba-1 (mouse monoclonal, Abcam, 1:1000), anti-iNOS (rabbit polyclonal, Novus Biologicals, 1:500), anti-human CD14 that is known to cross-react with mouse CD14 (rabbit polyclonal, Abcam, 1:200), anti-human CD14 (rabbit polyclonal, Thermo Scientific, 1:100), anti-human CD14 (rabbit polyclonal, Sigma, catalogue #HPA001887 at 1:250), anti-mouse CD14 (rat monoclonal, BD Biosciences, catalogue #553738 at 1:250), and anti-β-actin (mouse monoclonal, Cell Signaling, 1:500).
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6

Immunofluorescence Assay for Macrophage Polarization

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The primary macrophages were washed with PBS and fixed with 4% paraformaldehyde (PFA; Sigma−Aldrich, St. Louis, MO, USA) for 30 min before permeabilization with 0.3% Triton X-100 (Sigma−Aldrich) for 15 min and blocking for 2 h with PBS supplemented with 10% FBS and 0.1% Triton X-100. Cells were then incubated overnight at 4 °C with anti-CD68 (1:100; Bio-Rad Laboratories, Hercules, CA, USA), anti-iNOS (1:200; Novus Biologicals, Centennial, CO, USA) and anti-CD206 (1:200; Abcam, Cambridge, UK) antibodies. Cells were then washed with PBS before incubation with the respective secondary antibodies, Alexa Fluor 594 goat anti-mouse IgG (1:1000; Thermo Fisher Scientific) or Alexa Fluor 488 goat anti-rabbit IgG (1:500; Thermo Fisher Scientific) antibodies for 2 h at room temperature. Finally, macrophages were counterstained with 4′,6-diamidino-2-phenylindole (DAPI) and examined under a fluorescence microscope (IX70, Olympus, Tokyo, Japan). The polarization of macrophages was analyzed by measuring the staining intensity in five randomly selected fields at 200× magnification and expressed as relative mean fluorescence intensity (MFI).
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7

Kidney Immunofluorescence Staining Protocol

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For fluorescence staining, kidneys were irrigated with 4% PFA, dehydrated in 30% sucrose, and frozen in OCT compound (Sakura, Torrance, CA, USA). 6µm kidney sections were cut using a freezing microtome and prepared for staining with Alexa Fluor 555-conjugated α-SMA (1:500, Abcam, Cat#: ab202509) or the following unconjugated antibodies: anti-collagen I (1:50, Abcam, Cat#: ab270993), anti-Ki-67 (1:100, Abcam, Cat#: ab15580), anti-F4/80 (1:200, Abcam, Cat#: ab186073), anti-iNOS (1:50, Novus, Cat#: NB300-605), and anti-CD206 (1:50, Abcam, Cat#: ab64693). Then the sections were subjected to second or third fluorescence staining. After being stained, sections were incubated with or without DAPI for nuclear staining and sealed for photography using a confocal microscope (CTS SP8, Leica, Germany).
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