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216 protocols using p egfr

1

Western Blotting Antibodies and Imaging

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Western blotting was performed and detected as described previously [9 (link), 11 (link)]. Primary antibodies used were polyclonal anti-EGFR (Santa Cruz Biotechnology, TX, USA), monoclonal anti-α-tubulin (Sigma-Aldrich), anti-Lamin B1 (Abcam, MA, USA), Histone H3 (Sigma-Aldrich), p-Histone H3 (S10) (Milipore, MA, USA), Erk1/2, p-Erk1/2 (T202/Y204), AKT, p-AKT (T308), p-EGFR (T669), p-EGFR (Y845), p-EGFR (Y992), p-EGFR (Y998), p-EGFR (Y1045), p-EGFR (S1046/1047), p-EGFR (Y1086), p-EGFR (Y1148), p-EGFR (Y1173) (Cell Signaling Technology, MA, USA). The PDVF membranes were developed using enhanced chemiluminescence (ECL Plus; GE Healthcare Life Sciences, NJ, USA). Subsequently, the films were scanned and analyzed using Image J software (http://rsbweb.nih.gov/ij/).
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2

Western Blot Analysis of Signaling Proteins

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Western blot was performed as described previously. In brief, the total protein (30 μg) were separated SDS-PAGE. The gels were transferred to PVDF membranes. The membranes was blocked with 5% BSA, and incubated with primary antibodies against MGAT3 (1:500; ab135514; Abcam, Cambridge, MA, UK), GAPDH (1:10,000; G9545; Sigma-Aldrich, St. Louis, MO, USA), ERK (1:1,000; 4696; Cell Signaling Technology, Beverly, MA, USA), p-ERK (1:1,000; 4370; Cell Signaling Technology), AKT (1:1,000; 4685; Cell Signaling Technology), p-AKT (Ser473; 1:2,000; 4060; Cell Signaling Technology), p-EGFR (Y1173; 1:1,000; 4407; Cell Signaling Technology), p-EGFR (Y1086; 1:1,000; 3777; Cell Signaling Technology) and EGFR (1:1,000; 4267; Cell Signaling Technology) overnight at 4°C, and incubated with HRP conjugated secondary antibody.
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3

Immunofluorescence Analysis of Phospho-Proteins in Lung Tissue

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Lung tissues were processed as described above. Immunofluorescence was performed as previously described [46 (link)]. In brief, lung sections were incubated in blocking solution (5% bovine serum albumin (BSA) + 0.3% Triton X-100 in PBS) for 1 h, followed by incubation overnight at 4°C with primary antibodies [p-EGFR, p-Src, and p-ERK1/2 (1:50–1:100 dilution) or only 1% BSA (for negative control); Cell Signaling, USA], diluted in 1% blocking solution. On the following day, sections were washed and incubated with secondary antibody conjugated to Alexa Fluor 555 (Goat anti rabbit SFX kit; Life Technologies, USA, 1:400 dilution) for 2 h at room temperature) in the dark. After several washes in PBS, sections were stained with 4’, 6 diamidino-2- phenyl indole and mounted. Images were captured on a ZIESS LSM 700 confocal microscope and fluorescence intensity estimated in defined fields using Image J software package. The laser setting and photo processing were equal amongst the different treatment groups for each protein. 40x magnification for the tested molecules were equally modified in terms of sharpness and contrast to show localization of the phospho proteins in the lung tissue.
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4

Western Blot Protocol for Protein Expression

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Cells were lysed in PRO-PREPTM protein extraction solution (iNtRON Biotechnology, Cat# 17081) supplemented with phosphatase inhibitor cocktail (Gen DEPOT, Cat. No. p3200-001). Protein concentrations were then measured using a Bio-rad Bradford assay (Cat# 500-0006, Hercules, CA, USA). Equal amounts of protein were separated by SDS-polyacrylamide gel electrophoresis and transferred to PVDF membranes (Cat# 10600023). The membranes were blocked with Tris-buffered saline containing 0.05% Tween 20 and 5% non-fat dry milk for 1 h, and membranes were incubated overnight at 4 °C with primary antibody. HER2 (Cat# 2165, RRID:AB_10692490), p-HER2 (Cat# 2247, RRID:AB_331725), p-EGFR (Cat# 2234, RRID:AB_331701), Akt (Cat# 9272, RRID:AB_329827), p-Akt (Cat# 9271, RRID:AB_329825), ERK (Cat# 9102, RRID:AB_330744), and p-ERK (Cat# 9101, RRID:AB_331646) antibodies were obtained from Cell Signaling Technology (Beverly, MA, USA), EGFR (Cat# sc-03, RRID:AB_631420) was obtained from Santa Cruz, and ß-actin (Cat# A5316, RRID:AB_476743) was obtained from Sigma (Saint Louis, MO, USA). Then, horseradish peroxidase-conjugated secondary antibodies were incubated for 1 h at room temperature. Immunoreactive bands were detected with chemiluminescence reagent (Cat# RPN2106).
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5

Immunoblotting and Immunostaining Assay

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For immunostaining or western blotting, primary antibodies against the following proteins were used: MYOF (Santacruz); EGFR, pEGFR, EPHA2, and EPHA2-pS897 (Cell Signaling); VIM and E-cadherin (Abcam); and actin (Pierce). For western blot analysis, cells were washed once with ice-cold PBS and then lysed in cold RIPA buffer supplemented with protease inhibitor cocktail (Roche Applied Biosciences). Cell lysate was centrifuged at 12,000 × g for 30 min, boiled in 2 × loading sample buffer, separated on a 10% gradient SDS–PAGE gel and blotted onto a PVDF membrane. The membrane was blocked with 0.1% Tween-20 in TBS containing 5% non-fat milk and probed with the indicated primary antibody, followed by incubation with the appropriate secondary antibody conjugated to horseradish peroxidase (Sigma), and the signals were visualized via ECL (Millipore).
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6

Inhibition of AXL and EGFR Signaling

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Gefitinib (CAS No. HY-50895) and Osimertinib (AZD-9291, CAS No. HY-15772) were purchased from MedChemExpress (NJ, USA). Cycloheximide (CAS No. 66-81-9) was purchased from A.G. Scientific (CA, USA). Yuanhuadine (YD; purity >98.5%) was isolated from a CHCl3-soluble fraction of the flowers of Daphne genkwa, as described previously22 (link). All chemicals were dissolved in DMSO for in vitro experiments.
Antibodies against C-terminal AXL (sc-1096), EGFR (sc-03), p-ERK (sc-7383), ERK (sc-94), MET (sc-10), β-actin (sc-47778) were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). p-AXL (#5724), p-EGFR (#2234), p-MET (#3077), p-Akt (#9271), Akt (#9272), p-p70S6 Kinase (#9205), p70S6 Kinase (#9202), p-SAPK/JNK (#9091), SAPK/JNK (#9252), and snail (#3879) were obtained from Cell Signaling Technology (Danvers, MA, USA).
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7

Protein Expression Analysis in Cell Lines

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HM, NM, pCMV‐Vector and pCMV‐FAM83D cells were lysed using radioimmunoprecipitation assay (RIPA) buffer (20 mmol/L Tris‐HCl [pH 7.5], 150 mmol/L NaCl, 1 mmol/L Na2EDTA, 1 mmol/L EGTA, 1% NP‐40, 1% sodium, deoxycholate, 2.5 mmol/L sodium pyrophosphate, 1 mmol/L β‐glycerophosphate, 1 mmol/L Na3VO4, 1 µg/mL leupeptin and 1 mmol/L PMSF). Total proteins (20‐30 µg) were separated through polyacrylamide gel electrophoresis and transferred to a polyvinylidene difluoride membrane using a semi‐dry transfer system (Bio‐Rad). The membrane was incubated at 4°C overnight with specific primary antibodies for FAM83D (Biorbyt, orb183501), AKT (Cell Signal Technology, CST, MA, cat#: 4691), p‐AKT (CST, MA, cat#:4060), ERK1/2 (CST, MA, cat#:9102), p‐ERK1/2 (CST, MA, cat#: 9101), c‐Raf (CST, MA, cat#: 9422), p‐c‐Raf (CST, MA, cat#: 9421), EGFR (CST, MA, cat#: 4267), p‐EGFR (CST, MA, cat#:2234), P38 (CST, MA, cat#:9212), p‐P38(CST, MA, cat#:9211), N‐cadherin (CST, MA, cat#:13116), ZO1 (CST, MA, cat#:8193) and beta‐actin (CST, MA, cat#: 4970) used at a dilution of 1:1000. Subsequently, the membrane was incubated with secondary antibody (Bio‐Rad, CA, cat#: 1706515 in 1:5000 dilution) for 1 hour at room temperature. Clarity™ Western ECL Substrate (Bio‐Rad, cat#: 1705060) was used for the detection of protein signals. The signals were captured using the ChemiDoc™ XRS + Imaging Systems (Bio‐Rad, CA).
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8

Protein Analysis of MM1.S Cells

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Total proteins from MM1.S cells lysates, MM1.S exosome, conditioned medium of cells deprived of exosomes, patient’s exosomes, and RAW 264.7 lysates were extracted and analyzed by SDS-PAGE followed by western blotting. Antibodies used in the experiments were as follows: anti-EGFR, pEGFR (Cell Signalling Technology, Lane Danvers, MA, USA), anti-AREG (Novus Biologicals), and anti-GAPDH (Santa Cruz Biotechnology, CA, USA).
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9

Molecular Mechanisms Underlying Cellular Pathways

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3-Methyladenine (3-MA) was purchased from Selleckchem (Houston, TX). Antibodies to p-Smad3, Smad3, p-extracellular signal–regulated kinases 1/2 (ERK1/2), ERK1/2, p-EGFR, Beclin-1, Notch1, p-TAK1, TAK1 were purchased from Cell Signaling Technology (Danvers, MA). Antibodies to Collagen I (A2), GAPDH, EGFR, TGFβRI, p-NF-κB (p65), NF-κB (p65), TNF-α, Jagged-1, CD68 and CD3 were purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA). Anti-p-Histone H3 antibody was purchased from Abcam (Cambridge, MA). MCP-1, RANTES, TGF-β1 ELISA kits and antibody to lipocalin-2 (Lcn2) were purchased from R&D systems (Minneapolis, MN). Anti-LC3 antibody was purchased from Novus Biologicals (Littleton, CO). Anti-β-Catenin antibody was purchased from BD Biosciences (San Diego, CA). Anti-Wnt1 antibody was purchased from Rockland (Limerick, PA, U.S.A.). Vectastain ABC kit was from Vector Laboratories (Burlingame, CA). Malondialdehyde (MDA) and superoxide dismutase (SOD) biochemical reagent kits were purchased from Nanjing Jiancheng Bioengineering Institute (Nanjing, China). Antibodies to α-smooth muscle actin (α-SMA ) and β-actin, secondary antibodies for Western blot, and all other chemicals were purchased from Sigma (St. Louis, MO).
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10

Schisandrin A Modulates EGFR/PI3K/AKT Pathway

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The MDA-MB-231 cells were seeded in 6-well plates at a concentration of 6.0 × 104 cells/well and treated with SchA (0, 40 and 80 µM) for 24 h. RIPA lysis kit (Beyotime) and protein analysis kit (Takara, Kyoto, Japan) were used for cell lysis and total protein quantification analysis, respectively. The total protein was then separated on 10% SDS-PAGE gel electrophoresis and afterward transferred onto a nitrocellulose membrane by electroblotting (Millipore, Billerica, MA, USA). After blocking the membrane using 5% BSA for 2 h at room temperature, it was incubated overnight at 4°C with primary antibodies (p-EGFR, PIK3R1, Cleaved-caspase 3, AKT1, p-AKT1 and MMP9), in a dilution of 1:1000, (Cell Signaling Technology, Danvers, MA, USA). They were then incubated with secondary antibodies at room temperature for 1 h. Later, the membrane was washed in three tris buffered saline + Tween (TBST) cycles for 10 minutes. The proteins were then visualized by adding ECL (Thermo) and subsequently scanned and imaged using a FluorChem FC 3 system (ProteinSimple, USA). Finally, image J software was used to analyze the results.
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