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10 protocols using p35g 0 20 c

1

Fluorescence Recovery After Photobleaching of Espin in LLC-PK1-CL4 Cells

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LLC-PK1-CL4 cells were plated on No. 0 uncoated glass-bottom dishes (P35G-0-20-C; MatTek Corp., Ashland, MA) and co-transfected with equal amounts of untagged espin plasmid construct in the pcDNA3 vector (Life Technologies) and pEGFP–human beta-actin (Life Technologies). FRAP was performed 20–22 h after transfection in Leibovitz's L-15 medium (Life Technologies) containing 10% (v/v) fetal bovine serum at 37°C using a temperature-controlled stage. Initial experiments were conducted using a ×100 objective on the LSM510 META confocal microscope. Photobleaching was performed with the 488 nm laser at full power with a tube current of 6.5 A for 25–30 iterations. Post-bleach images were acquired at the designated intervals. Later experiments were carried out using a total internal reflection fluorescence ×100 NA1.49 objective (Nikon, Melville, NY) on a CSU-X1 spinning disk confocal (Andor, South Windsor, CT) equipped with FRAPPA module driven by Andor IQ2 software. The 488 nm laser was set at 100% for photobleaching at 50 µs pixel dwell and two iterations. Images were taken at 20 s intervals using an Andor iXon EMCCD camera and used to make QuickTime movies. For clarity, analysis was conducted on espin-elongated microvilli, ∼7–9 µm long, that extended out over the apical surface of a neighboring untransfected cell.
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2

Visualizing Cdc42 Activation in hPTCs

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hPTCs were seeded on glass bottom dishes (P35G-0-20-C, MatTek). Following 48h of transduction with Ad-h-WIPF3, they were starved for 24h in serum-free medium. Cdc42 was subsequently activated by incubating cells with epidermal growth factor (EGF; Cytoskeleton Inc., Cat# CN02) at 0,5 units/mL for 5 min. Cells were then fixed by addition of formaldehyde (Polysciences, Cat# 18814–20) directly into cell medium to a final concentration of 3,7%. After permeabilization (0.1% Triton X-100 in PBS for 5 min) and washing, cells were incubated with PBS containing 1% BSA for 45 min, and subsequently with rabbit anti-WIPF3 (anti-WIPF3: Atlas Antibodies, Cat# HPA041145 at 1:750) for 1 hour. Secondary goat anti-rabbit Alexa Fluor 488 was applied for 30 min together with fluorescent phalloidin (Alexa Fluor 555 Phalloidin at 1:400, Cat# A34055), and nuclei were counterstained with DAPI. Mounting medium (Aqua-Poly/Mount) was applied to the glass bottom (20 mm ∅), and a 15 mm diameter coverslip (VWR, Cat# 631 1579) was placed on top. One image was taken from the center of each dish using an Olympus BX60 microscope with a 20x objective and the CellSens Dimension software. The integrated density was measured in ImageJ, and fluorescence intensity was obtained as a measure of actin filaments in the all cells of each image.
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3

Polyacrylamide Gel Substrate Preparation

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Polyacrylamide gel substrates were prepared according to Wang and Pelham [71 (link)]. Briefly, No. 0 glass-bottom culture dishes (MatTek P35G-0-20-C; Ashland, MA, USA) were treated with 0.1 M NaOH, 97% (3-aminoproyl) trimethoxysilane (Sigma-Aldrich 281778; St. Louis, MO, USA), and 0.5% glutaraldehyde (Polysciences 01909; Warrington, PA, USA). Culture dishes were stored in a desiccator for up to 2 weeks until use. A 4.6 kPa hydrogel was made as follows: 100 µL of 40% acrylamide solution (Fisher Scientific BP1402; Waltham, MA, USA), 100 µL of 2% bis-acrylamide solution (Fisher Scientific BP1404; Waltham, MA, USA), 10 µL of 1 M 4-(2-hydroxyethyl) piperazine-1-ethanesulfonic acid (HEPES, Sigma-Aldrich H6147; St. Louis, MO, USA), 790 µL of deionized water, 6 µL of 1% ammonium persulfate (Bio-Rad 161-0700), and 4 µL of 0.4% (v/v) TEMED, (Fisher Scientific BP150; Waltham, MA, USA). Next, 4 µL of polymer solution was quickly pipetted onto the activated glass culture dishes and covered with a 12 mm No. 1.5 circular coverslip (Fisher Scientific 12-545-80; Waltham, MA, USA). Then, the coverslip was removed and washed three times with 50 nM HEPES. Finally, 1 mL of 200 mg/mL of type I collagen solution was added to the gel and the hydrogel was kept at 4 °C overnight.
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4

Redox Ratio and NADH Imaging

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All cell lines analyzed were initially plated on collagen, poly-ornithine/fibronectin, or poly-D-lysine coated 35mm dishes with a 20mm diameter glass center (MatTek Life Sciences, P35G-0-20-C) and allowed 3 days to equilibrate. Cells analyzed for optical redox ratio had no further manipulation performed. Cells analyzed for increase in NADH after exogenous GABA treatment were administered 2mM exogenous GABA for 24 hours. Imaging of autofluorescent metabolites, NADH and FAD, and data analysis were carried out following our established protocol (Zhou et al., 2020 (link)).
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5

Redox Ratio and NADH Imaging

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All cell lines analyzed were initially plated on collagen, poly-ornithine/fibronectin, or poly-D-lysine coated 35mm dishes with a 20mm diameter glass center (MatTek Life Sciences, P35G-0-20-C) and allowed 3 days to equilibrate. Cells analyzed for optical redox ratio had no further manipulation performed. Cells analyzed for increase in NADH after exogenous GABA treatment were administered 2mM exogenous GABA for 24 hours. Imaging of autofluorescent metabolites, NADH and FAD, and data analysis were carried out following our established protocol (Zhou et al., 2020 (link)).
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6

Polyacrylamide Hydrogel Preparation and Functionalization

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Polyacrylamide hydrogels (PAGs) were cast onto No. 0 glass bottom 35 mm culture dishes (MatTek P35G-0-20-C) using a previously described method and formulation [13 (link), 51 (link)]. Cast gels were then coated using sulfo-SANPAH (Thermo Fischer Scientific, Waltham, MA) as previously described (Bangasser et al. [13 (link)], Wang and Pelham [51 (link)]). In this study, Type I Collagen (354236, Corning, Corning, NY) or anti-CD44 antibody α-CD44 MAB (BDB553131, BD Biosciences, San Jose, CA) were used to coat PAGs. In general, 200 μg/mL Col I solution was used and 1-300 μg/mL α-CD44 MAB solution was used depending on the experiment. The Young’s Modulus of the PAGs was determined using the methods described by Bangasser et al.. 0.7, 4.6, 9.3, 19.8, 98.5, 195 kPa stiffnesses were used in this study, which were obtained by varying the cross-linker and polymer concentrations as previously described [13 (link)].
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7

Brain Slice Infiltration and Vascularization Assay

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Brain slices were transferred into DMEM/F12 media containing 8% FBS and 1x P/S and stored in an incubator at 37 °C and 5% CO2. Two hundred thousand cells were plated onto a slice and incubated overnight to allow cells to infiltrate into the slice. Cells typically invade up to 100 μm into the tissue. Isolectin GA-IB4 (Alexa Fluor 568; Molecular Probes, Eugene, OR) was added to the slice to stain the vasculature at least 30 min before imaging. The slice was transferred into a 6-well glass-bottom 35 mm culture dish (P35G-0-20-C; MatTek, Ashland, MA) with fresh media. A tissue culture anchor (SHD 42-15; Warner Instruments, Hamden, CT) was placed on top of the brain slice to prevent it from drifting during imaging.
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8

3D Culture of OVCAR5 Ovarian Cancer Cells

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OVCAR5 human epithelial cells were obtained from Fox Chase Cancer Institute. Cells were maintained as previously described in complete RPMI 1640 medium (10% fetal calf serum, 1% penicillin-streptomycin)23 (link). For 3D culture, protocols were adapted from previously published methods15 (link). Briefly, Matrigel (BD Biosciences) was pipetted into the center of a 35-mm MatTek dish (P35G-0-20-C; MatTek Corp). An OVCAR5 single-cell suspension (500 μL of 1.5 × 104 cells/mL) was then placed atop the solidified Matrigel bed to settle. After 30 minutes, 2% Matrigel-supplemented complete culture media was added. 2% Matrigel-supplemented complete media was refreshed every 2 to 3 days.
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9

Coculture of U251 Cells with Brain Slice

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After performing PS-OCT imaging, the brain slice was transferred onto No. 0 glass-bottom 35 mm culture dishes (P35G-0-20-C; MatTek, Ashland, MA). U251 cells (500,000–800,000) were plated onto the brain slice. Isolectin GS-IB4 (Alexa Fluor 568; Molecular Probes, Eugene, OR) was added to the brain slice to label the vasculature. Isolectin IB4 labels endothelial cells and has been used as a robust marker for vasculature (27 (link)). The cells were cocultured with the brain slice for 4 h before imaging to allow for cell infiltration into the brain slice. Cells typically invade up to 50 μm into the tissue. Before imaging, the brain slice was washed several times using cell culture media. A tissue culture anchor (SHD 42-15; Warner Instruments, Hamden, CT) was placed on top to prevent tissue drift during imaging.
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10

SIM Microscopy of Cytoskeletal Structures

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For SIM imaging, cells were plated on laminin coated #0 coverslip dishes (MatTek, P35G-0–20-C). Cells were fixed and permeabilized with a 1 min incubation in 0.3% glutaraldehyde, 0.25% Triton-X 100 solution in cytoskeletal buffer (10 mM MES monohydrate, 150 mM NaCl, 5 mM EGTA, 5 mM glucose, and 5 mM MgCl2; pH 6.1) followed by a 20 min incubation in 3% glutaraldehyde solution in cytoskeletal buffer. Cells were then reduced with two 5 min incubations with 0.1% NaBH4 and washed three times in PBS. The cells were then blocked with 5% goat serum in PBS for 1 h and subsequently stained with Phallodin 546 (1:500; Invitrogen, A22283) overnight at 4°C. After staining, the cells were given three 10 min washes and then directly imaged using a Zeiss Elyra structured illumination microscope and a Plan-Apochromat 63X/1.4 Oil DIC M27 objective (Zeiss). Samples were illuminated using an Argon multiline laser for excitation at 546 nm diode laser. Samples were captured with z-stack slices of 1 μm and SIM processed via Zen 2010 software. Using ImageJ, captured cells were presented as maximum intensity 3D projections.
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