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197 protocols using ab125212

1

Immunohistochemical Analysis of CD68+ Cells

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After washing with phosphate-buffered saline, tumor tissues were fixed in 4% (w/v) paraformaldehyde and embedded in paraffin. Paraffin sections were deparaffinized and rehydrated according to standard protocols and stained with H&E. For immunohistochemistry, tumor tissues were stained with an anti-CD68 primary antibody (diluted 1:100; Cat. #ab125212; Abcam) overnight at 4 °C. Next, an HRP-conjugated anti-rabbit IgG was added for 60 min at room temperature. Color was developed by incubation for 5 s with 3,3′-diaminobenzidine (DAB). Sections were counterstained with hematoxylin and examined under a microscope (Motic, Richmond, BC, Canada) at 100× magnification.
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2

Immunostaining Protocol for Neuroinflammation Assessment

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Immunostaining was conducted following established protocols [23 (link)]. Briefly, brain tissues were collected after cardiac perfusion with cold 4% paraformaldehyde (PFA), placed in 4% PFA overnight, and then dehydrated using 30% sucrose/PBS for 4 days. Tissues at distances of − 2.5 to − 5 mm from bregma were selected for serial sections of 25-μm thickness. Sections were incubated overnight with primary antibody, including anti-NeuN (1:200, MAB377, Abcam), anti-cleaved caspase-3 (1:400, #9661, CST), anti-Iba-1 (1:1000, 019–19741, Wako, Japan), anti-Iba-1 (1:500, ab5076, Abcam), anti-CD68 (1:1000, ab125212, Abcam), and anti-CD206 (1:500, AF2535, R&D, USA), and then incubated for 2 h at room temperature with the appropriate fluorescent secondary antibody (Jackson ImmunoResearch Laboratories). DAPI (Southern Biotech) was utilized for nuclear staining and mounting. Micrographs were taken using a confocal microscope (Olympus, Japan). Three sections per rat were used, and three random fields in the ipsilateral basal cortex were acquired in each section, and the immunopositive cells in the basal cortex were quantified using Image J software [24 (link)].
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3

Immunofluorescence Staining of Neural Markers

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Immunofluorescence staining was conducted as previously described (13 (link)). Staining was conducted overnight at 4°C with anti-NeuN (1:500; ab104225; Abcam, Waltham, MA), rabbit anti-CD68 (1:500; ab125212; Abcam), rat anti-BrdU (1:500; ab6326; Abcam) and/or rabbit anti-Iba1 (1:500; ab178847; Abcam) primary antibodies. Sections were then incubated with appropriate secondary antibodies for 60 mins at room temperature (1:500; Alexa Fluor goat anti-rabbit 594, A11037; Alexa Fluor goat anti-rabbit 488, A11008; Alexa Fluor goat anti-rat 594, A11007; Invitrogen, Waltham, MA) before mounting with DAPI Fluoromount-G (0100–20; SouthernBiotech, Birmingham, AL). Fluorescent images were captured with either an EVOS fluorescent microscope (ThermoFisher Scientific, Waltham, MA) or BZ-X800E fluorescent microscope (Keyence, Itasca, IL). Image analysis was performed using FIJI (ImageJ/Fiji, version 1.53o; National Institutes of Health, Bethesda, MD).
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4

Protein Isolate Comparison Protocol

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Whey protein isolate and soybean protein isolate were purchased from Hilmar Ingredients (Livingston, CA, USA) and Shaanxi Pioneer Biotech Co. Ltd. (Xi’an, Shaanxi, China), respectively. Normal saline was procured from Shijiazhuang No.4 Pharmaceutical Co. Ltd. (Shijiazhuang, Hebei, China). The antibodies against CD68 (ab125212) and MPO (ab208670) were purchased from Abcam (Cambridge, MA, USA).
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5

Histopathological Analysis of Liver Specimens

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Hepatic specimens were fixed in 4% paraformaldehyde and embedded in paraffin. Liver sections (4-µm thick) were cut serially and stained with an H&E staining kit based on the instructions. Immunohistochemistry was performed on the sections with anti-S100A9 (73425, CST, Danvers, MA, USA) or anti-CD68 (ab125212, Abcam, Cambridge, MA, USA) antibodies. Immunofluorescent staining was conducted with anti-S100A9 (73425, CST) and anti-F4/80 (6640, CST) antibodies to assess the localization of S100A9 in macrophages. The histological score of H&E tissue staining was determined based on four grades according to a previous study [39 (link)].
To evaluate liver cell apoptosis, tissue cryosections at 6 µm thickness were stained by using a TUNEL Apoptosis Detection kit (Roche, Basle, Switzerland) based on previously described protocols [40 (link)]. The ratio of TUNEL-positive cells to DAPI-positive nuclei was calculated and presented as the percentage of apoptotic cells for each group. For superoxide analysis, cryosections were stained with 1 µmol/L dihydroethidine (DHE, Sigma, St. Louis, MO, USA) in a PBS buffer (pH 7.4) for 30 min at 37 °C, as described previously [41 (link)]. Fluorescence images were obtained from 6–8 random fields for each sample with a Nikon microscope (Nikon, Tokyo, Japan).
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6

Dual-Labeling Immunofluorescence for Vascular and Immune Markers

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Seven-μm-thick paraffin-embedded tissue sections of formalin-fixed control and experimental rat brain hemispheres were mounted onto charged microscope slides, deparaffinized, subjected to antigen retrieval as described above, blocked with 10% BSA, and simultaneously incubated with antibodies against Dx1 and either α-smooth muscle actin (SMA) (AbCam, Cambridge MA, catalog #AB5694) (1:2500) (a vascular smooth muscle cell marker) or CD68 (AbCam, Cambridge MA, catalog # AB125212) (1:200), all diluted in 1% BSA. Antibody labeling was visualized using Alexa-conjugated fluorescent secondary antibodies (1:500, Life Technologies, Grand Island, NY.) Sections were treated with Autofluorescence Eliminator Reagent (Millipore, Billerica, MA) and mounted using Prolong Gold antifade agent with DAPI (Life Technologies). Tissue was imaged using a Zeiss LSM 780 confocal microscope (Carl Zeiss, Oberkochen, Germany) at the OHSU Advanced Light Microscopy core facility. Post-acquisition processing was performed using ImageJ software (NIH, Bethesda MD).
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7

Antibody Panel for Liver Cancer Markers

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Antibodies for CD3 (Ab5690), CD4 (Ab183685), CD68 (Ab125212), alpha fetoprotein (α-AFP) (Ab46799), and Glypican-3 (GPC-3) (Ab66596) were purchased from Abcam Inc. (Cambridge, MA). Antibodies for SV40 TAg (v-300) (sc-20800) were purchased from Santa Cruz Biotechnology, Inc. (Dallas, TX). Antibodies for CD8a (14-0808) and F4/80 (14-4801-81) were purchased from Affymetric eBioscience, (San Diego, CA).
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8

Immunohistochemical Analysis of Maxilla Sections

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The slides containing the maxilla sections were submerged in a citric acid-based antigen unmasking solution (Vector Laboratories) at 65°C overnight for antigen retrieval and then incubated with anti-CD68 antibody (cat. no. ab125212; Abcam) or p65 (cat. no. ab32536; Abcam) as primary antibodies. The tissue sections were visualized using 3-amino-9-ethylcarbazole (AEC; cat. no. SK-4205; Vector Laboratories, Inc.) at room temperature for 1 min, followed by counterstaining with hematoxylin for 1 min at room temperature, then sealed with ImmunoHistoMount solution (Agilent Technologies, Inc.). The digital images of the stained sections were obtained using the DP72 light microscope (Olympus Corporation).
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9

Immunohistochemical Analysis of Spinal Cord Tissue

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The paraffin-embedded sections (4 μm) of the spinal cords were mounted on glass slides. IHC analysis of the sections was performed using an automated slide preparation system (Benchmark XT; Ventana Medical Systems Inc., Tucson, AZ, USA). Deparaffinization, epitope retrieval, and immunostaining were performed using cell conditioning solutions and the BMK ultraVIEW diaminobenzidine detection system (Ventana Medical Systems Inc., Tucson, AZ), following the manufacturer’s instructions. The tissue sections were stained with anti-CD3 (#ab16669, Abcam), anti-CD68 (#ab125212, Abcam), and anti-PAX5 (#ab109443, Abcam) primary antibodies. The positive signals were amplified using ultraVIEW copper. The sections were counterstained with hematoxylin and bluing reagent. The number of CD3-, CD68-, and PAX5-immunoreactive cells in the white matter and pia mater of the spinal cord was examined using a light microscope and normalized to the total area of white matter and pia mater.
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10

Antibody Panel for Liver Cancer Markers

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Antibodies for CD3 (Ab5690), CD4 (Ab183685), CD68 (Ab125212), alpha fetoprotein (α-AFP) (Ab46799), and Glypican-3 (GPC-3) (Ab66596) were purchased from Abcam Inc. (Cambridge, MA). Antibodies for SV40 TAg (v-300) (sc-20800) were purchased from Santa Cruz Biotechnology, Inc. (Dallas, TX). Antibodies for CD8a (14-0808) and F4/80 (14-4801-81) were purchased from Affymetric eBioscience, (San Diego, CA).
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