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26 protocols using serine threonine phosphatase assay system

1

In vitro SnRK2 dephosphorylation assay

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In vitro dephosphorylation assays with SnRK2s as substrates were performed in buffer containing 20 mM Tris–HCl, pH 7.5 and 25 mM MgCl2 (final volume 25 μL), for 30 min at 30 °C. Reactions were stopped by addition of Laemmli sample buffer and boiling for 2 min. Specific activity of recombinant phosphatases was determined using the Serine/Threonine Phosphatase Assay System (Promega, www.promega.com) and activity units (U) were calculated for each phosphatase, where one U is the amount of phosphatase, which releases 1 picomole of phosphate per minute.
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2

Quantifying PP2A Phosphatase Activity

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PP2A phosphatase activity was determined using Serine/Threonine Phosphatase Assay System by Promega (WI, USA) following the manufacturer’s instructions. Cells were lysed and subjected to Sepadex G-25 columns to eliminate cellular free phosphate, then protein concentrations were quantified. PP2A phosphatase activity was determined by detecting free phosphate generated from Ser/Thr Phosphopeptide (RRA(pT)VA). Reaction mixtures including 5ug of proteins, PP2A 5× reaction buffer (250 nM imidazole (pH 7.2), 1 mM EGTA, 0.1% β-mercaptoethanol, and 0.5 mg/ml BSA), and phosphopetide were incubated in 37 °C for 30 min, and acidic molybdate dye was added to stop the reaction. 20 nM of okadaic acid or DMSO were added to reaction mixtures as a control. The absorbance of a molybdate/malachite green/phosphate complex generated from the reaction was measured at 630 nm. We prepared 3 individual wells/group to calculate the standard deviation.
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3

Quantifying Serine/Threonine Phosphatase Activity

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Phosphatase activity of mouse brain tissues was quantitated using the Serine/Threonine Phosphatase Assay System (Promega, V2460) by measuring the dephosphorylation of a phospho-peptide, RRA(pT)VA. Briefly, mouse brain tissues were homogenized in the phosphatase storage buffer (10 mM Tris-HCl [pH 7.4], 150 mM NaCl, 1 mM EDTA, I mM EGTA, 0.5% NP-40) containing protease inhibitors. Proteins were extracted on ice with periodic vortexing for 30 min, and lysates were cleared by centrifugation at 10,000 × g for 10 min at 4°C. Two hundred µl of supernatants was passed through Sephadex G-25 column to remove the residual phosphate in the supernatants. Two µl of samples was incubated with 100 µM of phosphopeptide (RRA(pT)VA) at 37 °C for 30 min in buffer consisting of 250 mM imidazole [pH 7.2], 1 mM EGTA, 50 mM MgCl2, 5 mM NiCl2, 250 µg/ml calmodulin and 0.1% β-mercaptoethanol without or with 20 nM okadaic acid. To terminate the reaction, 50 µl of Molybdate dye with additive mixture was added to the mixture. The mixture was incubated for 10 min at room temperature to allow color development. Absorbance was measured at A600 using the Synergy HT plate reader (BioTek). Phosphate released was determined by comparing absorbance to a standard phosphate curve. PP2A activity was defined as the activity inhibited by the addition of 20 nM okadaic acid to the phosphatase reaction mixture.
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4

Quantifying Serine/Threonine Phosphatase Activity

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Phosphatase activity of mouse brain tissues was quantitated using the Serine/Threonine Phosphatase Assay System (Promega, V2460) by measuring the dephosphorylation of a phospho-peptide, RRA(pT)VA. Briefly, mouse brain tissues were homogenized in the phosphatase storage buffer (10 mM Tris-HCl [pH 7.4], 150 mM NaCl, 1 mM EDTA, I mM EGTA, 0.5% NP-40) containing protease inhibitors. Proteins were extracted on ice with periodic vortexing for 30 min, and lysates were cleared by centrifugation at 10,000 × g for 10 min at 4°C. Two hundred µl of supernatants was passed through Sephadex G-25 column to remove the residual phosphate in the supernatants. Two µl of samples was incubated with 100 µM of phosphopeptide (RRA(pT)VA) at 37 °C for 30 min in buffer consisting of 250 mM imidazole [pH 7.2], 1 mM EGTA, 50 mM MgCl2, 5 mM NiCl2, 250 µg/ml calmodulin and 0.1% β-mercaptoethanol without or with 20 nM okadaic acid. To terminate the reaction, 50 µl of Molybdate dye with additive mixture was added to the mixture. The mixture was incubated for 10 min at room temperature to allow color development. Absorbance was measured at A600 using the Synergy HT plate reader (BioTek). Phosphate released was determined by comparing absorbance to a standard phosphate curve. PP2A activity was defined as the activity inhibited by the addition of 20 nM okadaic acid to the phosphatase reaction mixture.
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5

Assaying PP2A and PP1 Phosphatase Activities

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PP2A assays were performed as described in (Chen et al., 2004 (link)). Briefly, cells were lysed, and lysates were incubated with αPP2A-A alpha antibody (6F9, Covance, Emeryville, CA, USA), followed by incubation with protein G sepharose (GE Healthcare, Little Chalfont, Buckinghamshire, UK). Immunoprecipitated PP2A was washed extensively, and its activity was assayed using a serine/threonine phosphatase assay system (Promega, Fitchburg, WI).
To assay PP1 activity, cells were lysed, and extracts were purified over a Sephadex G25 column (Promega) to remove endogenous phosphate. Total phosphatase activity in the extracts was assayed in the presence or absence of 10nM and 1μM okadaic acid (OA). Specific PP1 activity was defined as the activity that was insensitive to pre-incubation with 10nM OA. See Supplemental Experimental Procedures for details.
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6

Quantification of Protein Phosphatase Activity

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Protein Ser/Thr phosphatase activity was assayed photometrically using the Serine/Threonine Phosphatase Assay System (Promega, USA) according to the manufacturer’s instructions. TGF-β1 treated cells were lysed by RIPA buffer supplemented with protease inhibitor cocktail. 250 μl of the supernatant was passed through the prepared Sephadex G-25 spin column to remove free phosphate. The sample was incubated with reaction solution at 37°C for 15 min. Then the reaction was terminated with Molybdate Dye/Additive mixture at room temperature for 15 min. The plate was read at 600 nm to calculate the activity of PP2A.
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7

Quantifying Cellular Protein Phosphatase Activity

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A Serine/Threonine phosphatase assay system (Promega, Madison, WI, USA) was used to measure phosphate release as an index of phosphatase activity according to the manufacturer's instructions with modifications. Briefly, 200 μg of cellular proteins were incubated for 2 h at 4°C with 2 μg anti-PP2A-C antibody (GeneTex, Irvine, CA, USA), and 20 μl protein A-Magnetic Beads (Millipore, Billerica, MA, USA), to immunoprecipitate PP2A-C. Immune complexes were then collected, washed three times, and incubated with phosphoprotein, the substrate (amino acid sequence RRApTVA, 100 μM), in protein phosphatase assay buffer (20 mM 4-morpholinepropanesulfonic acid (pH 7.5), 60 mM 2-mercaptoethanol, 0.1 M NaCl, and 0.1 mg/ml serum albumin). Reactions were initiated by the addition of the phosphoprotein substrate and carried out for 15 min at 37°C. We also prepared appropriate phosphate standard solutions containing free phosphate for standard curve. Reactions were terminated by the addition of 50 μl of the Molybdate Dye solution. The absorbance at 600 nm was measured on a microplate reader. Nonspecific hydrolysis of RRApTVA by lysates was assessed in normal IgG immunoprecipitates.
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8

Phosphatase activity assay of AHG1

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Phosphatase activity of AHG1 was measured in 50 μL reaction buffer containing 25 mM Tris-HCl (pH7.5), 10 mM MgCl2, 1 mM DTT with or without 50 μM ABA using Serine/Threonine phosphatase assay system (Promega). The phosphopeptide HSQPK(pS)TVGTP, corresponding to the regulatory phosphorylation site of SnRK2s, was synthesized and purified by Scrum Inc. Using synthetic SnRK2s phosphopeptide as substrate, the reaction buffer was added, which is 100 μM SnRK2s phosphopeptide and 200 μM AHG1ΔΝ (1-103) with or without 800 μM heme-bound DOG1. Using an artificial substrate for phosphatase 2A, 2B, and 2C, reaction buffer was added, which is 25 μM RRA(pT)VA peptide (Promega) and 50 μM AHG1ΔΝ (1-103) with or without 200 μM heme-bound DOG1. After 30 min at 30 °C, each reaction was stopped with 50 μL molybdate dye solution. The absobance at 600 nm was measured with a plate reader (GloMax-Multi + Detection system; Promega).
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9

Quantification of PP2A Phosphatase Activity

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NPCs were washed with pre-chilled PBS and collected in RIPA lysis buffer. Then, the cells were centrifuged at 2000 g for 10 min at 4 °C. The supernatant was collected, and the protein concentration was measured. PP2A activity was determined using the Serine/Threonine Phosphatase Assay System (Promega, Cat# V2460) according to the manufacturer’s manual.
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10

Phosphatase Activity Assay for INPP4B

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Protein Serine/Threonine or Tyrosine phosphatase activity of INPP4B was measured by the Serine/Threonine phosphatase assay system or Tyrosine phosphatase assay system from Promega (San Luis Obispo, CA, USA) as described before.35 (link), 36 (link) Briefly, INPP4B or the control goat IgG precipitates from 2 mg whole-cell lysate were incubated with Serine/Threonine or tyrosine phosphopeptides as the substrate. Levels of released free phosphate or PO4 were determined after 10-min incubation at room temperature. INPP4B protein phosphatase activity was calculated by subtracting the nonspecific activity of in IgG precipitates. Naf, an inhibitor of Serine/Threonine phosphatase, was used to validate the assay.
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