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18 protocols using inactivated fetal bovine serum

1

Carbohydrate Characterization of Prozima Prolav 750

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Roswell Park Memorial Institute 1640 medium (RPMI 1640) and inactivated fetal bovine serum (BSF) were obtained from Gibco®, Life Technologies (Carlsbad, CA, USA). Prozima Prolav 750 was purchased from Prozyn Biosolutions (São Paulo, SP, Brazil). Ethylenediaminetetraacetic acid (EDTA), l-fucose, d-xylose, d-galactose, d-mannose, d-glucose, d-arabinose, d-rhamnose, d-glucuronic acid, N-d-acetylglucosamine, d-galactosamine, d-glucosamine, and silver nitrate were all obtained from Sigma Aldrich Co. (St. Louis, MO, USA). The other solvents and chemical reagents used in this study were of analytical grade.
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2

EMT induction and AZIN2 overexpression in colon and lung cancer cells

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The human colorectal carcinoma cell lines, HT-29, T84, LS174T, and the lung carcinoma cell line A549 (obtained from ATCC Manassas, VA, USA) were cultured in RPMI (Sigma-Aldrich, Saint Louis, MO, USA) supplemented with 10% (v/v) inactivated fetal bovine serum (Gibco, Thermo Fisher, Waltham, MA, USA), 1 mM L-glutamine (Honeywell Fluka, Thermo Fisher, Waltham MA,USA), 50 mg/ml penicillin, 50 mg/ml streptomycin and G418 (800 microg/ml) at 37°C in an atmosphere of 5% CO2 in air.
We induced EMT in HT-29 cells [16 (link)]. The cultures were serum-starved for 5 h before addition of recombinant human TGF-β1 (Sigma; 10 ng/ml) and human TNF-α (R&D Systems; 10 ng/ml) in medium supplemented with one percent FBS. After 48 h of cultivation, the cell morphology was monitored and the samples were harvested for qRT-PCR and western blotting.
The T84 cell line was stably transfected with pcDNA3 (Invitrogen, Carlsbad, CA, USA) encoding human AZIN2 cDNA [17 (link)]. Control cells were transfected with the empty vector.
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3

Neonatal Fibroblast Differentiation Protocol

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Human dermal fibroblasts (HF) isolated from neonatal foreskin (cat. no. C-004-5C, Thermo Fisher, Carlsbad, CA, USA) were seeded in medium composed of high-glucose D-MEM (Biowhittaker, Lonza, Verviers, Belgium) supplemented with 10% inactivated fetal bovine serum (Gibco, Waltham, MA, USA), 1% glutamine, and 1% penicillin-streptomycin (Gibco) and maintained in a 5% CO2 atmosphere at a temperature of 37 °C inside CO2 incubators (Thermo Fisher Scientific, Waltham, MA, USA). The cells were subcultured once a week.
HF were plated at 450 cells/cm2 density on the bottom of 60 mm Petri dishes (Nunc, Roskilde, Denmark), except for immunofluorescence assays, in which the cells were seeded on glass coverslips placed on the bottom of the plates. One day after seeding, cells were incubated with complete DMEM supplemented with 2 ng/mL of TGF-β1 (Peprotech, Rocky Hill, NJ, USA) for an additional 12 or 13 days depending on the experiment, renewing this conditioned culture medium every 4 days (Figure S1). Depending on the aim of the corresponding experiment, a total of 5 or 10 Petri dishes were used for experimental replicate.
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4

Adipogenic Differentiation of MSCs

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MSCs were plated at density 1000 cells/cm2 in 6-well plates and cultured in the platelet lysate supplemented basal culture medium with 100 IU/ml penicillin and streptomycin until 70–100% confluent. Adipogenic differentiation was induced for 3–4 days by an induction medium consisting of αMEM GlutaMax (Gibco, Life Technologies), 10% inactivated fetal bovine serum (Gibco, Life Technologies), 20 mM Hepes (Gibco, Life Technologies), 100 U/ml penicillin and streptomycin (Gibco, Life Technologies) supplemented with the induction cocktail of 0.1 mM indomethacin (Sigma), 44 μg/ml 3-isobutyl-methyl-xanthine (IBMX-22*), 0.5 μg/ml insulin (Insulin-0.25*) and 0.4 μg/ml dexamethasone (DM-200*) (*Preadipocyte Differentiation Medium Supplement Pack, PromoCell, Italy). Control cells were only maintained in induction medium without the induction cocktail. Differentiation was finalized by culturing the cells in a terminal differentiation medium consisting of induction medium supplemented with 0.1 mM indomethacin (Sigma), 0.5 μg/ml insulin (Insulin-0.25*) and 3.0 μg/ml ciglitazone (Ciglitazone-1.5*) (*Preadipocyte Differentiation Medium Supplement Pack) for 2–4 weeks until visible lipid droplets could be observed. The cells were fixed with 4% PFA and were stained using Sudan III.
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5

Cytotoxicity Assay of Cell Lines

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Human colorectal adenocarcinoma cells (DLD-1) and the kidney of an African green monkey cell derived (Vero) were cultured in Dulbecco’s Modified Eagle Medium (DMEM, Gibco-Thermo Fisher Scientific, MA, USA) supplemented with 10% of inactivated fetal bovine serum (Gibco-Thermo Fisher Scientific, MA, USA). The cells were transferred to a 96-well microplate, so the initial cell number was 1.25 × 104 cells 5 × 103 cells for DLD-1 and Vero, respectively, per well, then incubated at 37 °C, 5% CO2 for 24 h. The sample was added as much as 0.4 µL or a volume so the final concentration of DMSO in the culture was less than 1%, then incubated at 37 °C, 5% CO2 for 48 h. After being washed with 100 µL of PBS, the cell was resuspended with 100 µL of DMEM containing 10% of Cell Counting Kit-8 (Dojindo, Kumamoto, Japan) and placed in the incubator at 37 °C, 5% CO2 for 3 h. The absorbance of each well was measured at 450 nm by a plate reader (Spectramax Paradigm, Molecular Devices, San Jose, CA, USA).
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6

Murine Dendritic Cell Generation

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DCs were generated as described previously by Oliveira et al. [29 (link)], with some modifications. Briefly, bone marrow obtained from femurs and tibiae removed from C57BL/6 mice were cultured in 10 ml RPMI-1640 (GE Healthcare, Uppsala, Sweden) supplemented with 10% v/v inactivated fetal bovine serum (Gibco, Grand Island, NY, USA), 50 mM 2-mercaptoethanol (Sigma), 1 mM sodium pyruvate (Sigma), 25 mM sodium bicarbonate (Gibco), 10 mM HEPES (Sigma), 100 UI/ml penicillin (Sigma), 100 μg/ml streptomycin (Sigma), 25 mM L-glutamine (Gibco), and murine GM-CSF (25 ng/ml). Cells suspensions were prepared at 2.0 × 105 cells/ml. On the fourth day of culture, 10 ml of culture medium supplemented with GM-CSF (50 ng/ml) was added to the plate. After seven days of culture, cells were harvested and their phenotype determined according to expression of CD11b and CD11c by flow cytometry; experiments were continued only when a DC phenotype was confirmed.
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7

Culturing RAW 264.7 mouse macrophages

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Raw 264.7 cells—a mouse leukemic monocyte macrophage cell line (ATCC TIB-71)—were cultured (as described elsewhere [17 (link)]) in Dulbecco’s modified Eagle’s medium (DMEM; Sigma-Aldrich, St. Louis, MO, USA), supplemented with: 10% inactivated fetal bovine serum (Gibco, Paisley, UK); 100 U/mL penicillin (Sigma-Aldrich, St. Louis, MO, USA); and 100 µg/mL streptomycin (Sigma-Aldrich, St. Louis, MO, USA), at 37 °C in a humidified atmosphere of 95% air and 5% CO2. Throughout the experiments, cells were monitored by microscopy in order to detect any morphological change.
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8

Overexpression and Silencing of β3GnT8 and β3GnT2 in CRC Cell Lines

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The human CRC cell lines SW620, LS174T, and LoVo were cultured in RPMI-1640 (Gibco, Life Technologies) supplemented with 10% inactivated fetal bovine serum (Gibco, Life Technologies). All cell lines were cultured in a humidified atmosphere with 5% CO2 at 37°C. The pEX-2-C1 (Mock), pEX-2-β3GnT8, and pEX-2-β3GnT2 plasmids were constructed as previously described (Liu et al., 2014 (link)). The pSilenCircle-negative control (NC), pSilenCircle-β3GnT8 (si-β3GnT8), and pSilenCircle-β3GnT2 (si-β3GnT2) plasmids was established by GenePharma (Suzhou, China). Cells were collected 48 h for assays after transfection with Lipofectamine 2000 reagent (Invitrogen, Carlsbad, CA, United States).
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9

Fucosylated Clusterin Modulates Monocyte Function

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Monocytes were isolated by positive selection using magnetic beads (Miltenyi Biotec), and cultured in RPMI 1640 medium containing 10% of inactivated-fetal bovine serum (Gibco) and recombinant M-CSF (100 ng/ml) (Miltenyi Biotec), in the presence or absence (control) of fucosylated clusterin (20 µg/ml) isolated from human seminal plasma. After 5 days, the cells were stimulated with LPS (10 ng/ml) for 24h at 37ºC. Then, cells and supernatants were harvested and analyzed by flow cytometry and ELISA, respectively.
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10

Culturing T. cruzi Life Stages

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T. cruzi epimastigotes (Dm28c strain) were cultured at 28 °C in Diamond medium (0.1 M NaCl, 0.05M K 2 HPO 4 , 0.625% tryptose, 0.625% tryptone, 0.625% yeast extract, pH 7.2), supplemented with 10% inactivated fetal bovine serum (Gibco) and 12.5 µg/ml hemin (Lozano et al., 2012) . Trypomastigotes and amastigotes were maintained in Vero cells (ATCC CCL-81) with DMEM supplemented with 10% fetal bovine serum at 37 °C in a 5% CO 2 humidified incubator. Cell viability was determined by the MTT assay, according to Catunda et al.,2017 .
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