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3 protocols using ha ha 7 h9658

1

Antibody Characterization for Yeast Protein Detection

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Mouse monoclonal antibodies against the FLAG (M2; F3165) and HA (HA-7; H9658) tags were from Sigma-Aldrich. Rabbit polyclonal antibodies against the FLAG (SAB4301135) and HA (51064-2-AP) tags were from Sigma-Aldrich and Proteintech, respectively. Other antibodies include the anti-Aac2 monoclonal antibodies 6H8 and 2C10 (65 (link)), rabbit anti-Tom70 (66 (link)), anti-Atp1/2 (67 (link)), anti-Por1 (68 (link)), anti-Kgd1 and anti-Cor2 (69 (link)), anti-Aac2 (19 (link)), anti-Cox1 (70 (link)), anti-Cox2 (71 (link)), anti-Cox4, anti-Rip1, and anti-Qcr6 (72 (link)), anti-Om45 (73 (link)), and horseradish peroxidase–conjugated (Figs. 1; 2F; 3B; 4; 5, A and F; and 6, A and E; and figs. S1 and S2) and DyLight fluorophore–conjugated (Figs. 2, B and E; 5, D and E; and 6D) secondary antibodies (Thermo Fisher Scientific).
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2

Immunofluorescence Staining of Tagged Proteins

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Cells were plated on coverslips and transfected following overnight incubation. Cells were fixed with 3% paraformaldehyde, permeabilized in 0.5% Triton-X100 for 10 min and blocked in 5% FBS diluted in PBS. Coverslips were incubated overnight with primary antibody HA (HA-7, H9658, Sigma-Aldrich) or FLAG (M2, F1804, Sigma-Aldrich), washed in PBS and incubated with anti-mouse Alexa Fluor 488 secondary antibody (Invitrogen, Life Technologies, Burlington, ON, Canada). Cells were mounted with ProLong Gold antifade with DAPI (Invitrogen). Visualization was done using an Olympus BX51 microscope with a 40x objective and images were captured with the Image-Pro Plus software (Media Cybernetics Inc., Bethesda, MD, USA). For quantification analysis, images were blinded by a third party.
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3

Western Blot Protein Analysis

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Equal amounts of protein from cell lysates were separated by SDS PAGE and transferred onto a nitrocellulose membrane by a semi-dry transfer method (Trans Blot® SD Semi-Dry Transfer cell, Bio-Rad, USA). Membranes were blocked with 5 % milk solution before incubation with primary antibodies at 1:1000 dilution unless otherwise stated: USP13 (D4P3M; 12577, CST), Mcl-1 (S-19; sc-819, SCBT), Phospho-c-Jun (Ser73) (D47G9; 3270, CST), c-Jun (60A8; 9165, CST), FLAG (F1804, Sigma-Aldrich), HA (HA-7; H9658, Sigma) and GAPDH (SCBT; sc365062) (1:5000) as a loading control. Horseradish peroxidase (HRP)-conjugated secondary antibodies (Sigma Aldrich, USA) were used at a 1:5000 dilution. Proteins were detected using WesternBright ECL (Advansta, USA) and visualised on X-ray film.
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