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14 protocols using ab96879

1

Comprehensive Immunoblotting Antibody Panel

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The following antibodies were used: rabbit polyclonal antibody against phospho S139 gamma H2A.X (ab2893, Abcam), rabbit monoclonal antibody against alpha-tubulin (ab52866, Abcam), mouse monoclonal antibody against UBF (sc13125, Santa Cruz), RPA194 (sc48385, Santa Cruz), phospho S139 gamma H2A.X antibody (ab26350, Abcam), Anti-BrdU antibody (B8434, Sigma), sheep polyclonal antibody against BrdU (ab1893, Abcam), Alexa 488-conjugated goat anti-mouse IgG (A11029, Invitrogen), Alexa 568-conjugated goat anti-rabbit IgG (A11011, Invitrogen), DyLight 488 goat anti-mouse IgG (ab96879, Abcam), isotype mouse IgG antibody (ab91353, Abcam), alkaline phosphate-conjugated rabbit IgG (ZB5305, ZSGB) and HRP goat anti-mouse IgG (A0208, Beyotime).
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2

Visualizing SARS-CoV-2 Infection in ACE2-expressing Cells

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The ACE2-expressing plasmids were maintained in our laboratory. A549 cells transiently expressing ACE2 were prepared using FuGENE HD (Promega, USA) in a confocal dish, and vector-transfected cells were used as controls. MpCoV-GX cultured in VeroE6 cells was used for infection at an MOI of 1. After adsorption at 37°C, the supernatant was removed and the cells were washed twice with PBS and incubated in medium. At 24 h postinfection (hpi), the cells were washed with PBS and fixed with 4% paraformaldehyde at room temperature for 30 min. ACE2 expression was detected using a mouse anti-S tag monoclonal antibody (made in-house) and a fluorescein isothiocyanate (FITC)-labeled goat anti-mouse IgG(H+L) (ab96879; Abcam). Viral replication was detected using a rabbit antibody against the Rp3 Np (1:2,000) and a Cy3-conjugated goat anti-rabbit IgG (1:200, ab6939; Abcam). Nuclei were stained with 4′,6-diamidino-2-phenylindole (DAPI) (Beyotime). The staining patterns were examined by confocal microscopy using a Stellaris 8 WLL microscope (Leica).
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3

Quantifying IGF1R Expression in PDAC Cells

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The expression of IGF1R on PDAC cells was examined using a FACScan (BD LSR II; Becton Dickinson, San Diego, CA). Cells (2 x 106 cells/mL) were fixed with 2% paraformaldehyde and incubated in PBS with anti IGF1R antibody (ab16890, Abcam) or mouse IgG1- isotype control (ab91353, Abcam) for 30 min at 22°C. Cells were subsequently labeled with FITC-conjugated secondary antibody (1:500; ab96879, Abcam) for 30 minutes at 22°C. The percentage of positive cells were calculated and compared with isotype-matched control-stained cells.
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4

Immunohistochemical Analysis of Epidermal Markers

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Following TPEF imaging, tissues were fixed to be stained with hematoxylin and eosin (H&E) or antibodies against keratin 10 (K10), keratin 14 (K14), involucrin (Inv), loricrin (Lor), and proliferation marker [proliferating cell nuclear antigen (PCNA)]. Antigen retrieval was performed by incubating sections in a citrate buffer (10 mmol/L citric acid, 0.05% Tween 20, pH 6.0) at 95°C for 20 minutes. Primary antibodies were used at the indicated dilutions: K10 (1:200, Abcam ab9026), K14 (1:200; Abcam ab7800), involucrin (1:200, Abcam ab53112), loricrin (1: 80, Sigma-Aldrich AV41738), and PCNA (1:250, Abcam ab29). Secondary antibodies were used at the indicated dilutions: goat anti-rabbit (1:200; Abcam ab96885) and goat anti-mouse (1:200, Abcam ab96879). Slides were mounted using Vectashield H-1200 Mounting Medium with DAPI (Vector Labs) and imaged with a Leica DFC340 FX camera.
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5

Immunofluorescence Assay for Vimentin in HTFs

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HTFs were cultured in a four-chamber culture chamber at the concentration of 10×103 cells/well in complete culture media and incubated at 37 °C, 5% CO2 for 24 h. The slides were fixed with 100% acetone (R&M, Essex, UK) and were left to dry. The slides then were washed with PBS (1X 0.02 mol/l NaPO4, 0.15 mol/l NaCl, pH 7.0; DAKO; Agilent Technologies, Glostrup, Denmark) and subsequently incubated with anti-vimentin antibody [V9] (ab8069) from (Abcam; Cambridge, UK) with 1:100 dilution in a wet chamber. Then the slides were washed again with PBS and were further incubated with goat polyclonal secondary antibody to mouse (Abcam, Ab96879) in 1:100 dilution in a wet chamber. These steps were performed in a dark room. After the final washing step, the slides were mounted with 4’6-diamidino-2-phenylindole-dilactate (DAPI; DAKO) and fluorescence mounting medium and covered with coverslips. The slides then were viewed immediately. HTF cytoplasm stained positively with anti-vimentin antibody appeared green, and the nucleus appeared blue.
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6

Visualization of biotinylated (EIS)2-RGD6 in animals

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To visualize biotinylated (EIS)2-RGD6 in animals used to perform experiment (EIS)2-RGD6 II, a set of parallel sections per animal were first processed for the visualization of GFAP following the aforementioned fluorescence-based simple immunohistochemistry protocol. The following primary and secondary antibodies were used: monoclonal mouse anti-GFAP (G3893, Sigma-Aldrich, Steinheim, Germany; 1:500) and Dylight488-linked goat anti-mouse (ab96879, Abcam, Cambridge, UK). Subsequently, sections were immersed in buffer blocking—10% foetal bovine serum (10500064, Fisher Scientific, Madrid, Spain), 0.3% bovine serum albumin (A7906, Sigma Aldrich, Steinheim, Germany), 0.3% Triton X-100 (X100, Sigma Aldrich, Steinheim, Germany) in TBS—for 1 h at room temperature (RT), incubated with alexa594-linked streptavidin (S11227, Thermo Scientific, Paisley, UK; 1:500) for 1 h at RT and, after several washes, with DAPI (62247, Thermo Scientific, Paisley, UK; 1:5000) for 5 min at RT. Finally, sections were cover-slipped with Immumount (9990402, Epredia, Breda, The Netherlands).
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7

Protein Expression Analysis of NPCs

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NPCs were seed in 6-well plates. When cell number reached 5 × 106/well, 200 μL RIPA reagent/well was used to extract the total proteins of NPCs in different treatment groups, and the proteins were quantitatively analyzed with BCA protein detection kit according to the instruction. The same amount of protein sample was separated through 12% SDS-PAGE, and then, the protein was electrically transferred to PVDF membranes. The membranes were blocked with 5% skimmed milk powder, and then, the corresponding primary antibody was added for overnight incubation at 4 °C. The membranes were added with secondary antibody and incubated for 1.5 h. ECL solution was added for visualizing the bands, GAPDH was used as internal reference, and Image J software was used for quantitative analysis of protein gray. The primary antibodies used in the experiment included: MMP-3 (ab52915, Abcam, 1:1000), MMP-13 (ab51072, Abcam, 1:1000), ADAMTS-4 (ab84792, Abcam, 1:1000), ADAMTS-5 (ab41037, Abcam, 1:1000), collagen II (ab188570, Abcam, 1:1000), NOX4 (ab154244, Abcam, 1:1000), NF-κB (ab32536, Abcam, 1:1000), p-NF-κB (ab76302, Abcam, 1:1000), GAPDH (ab181602, Abcam, 1:1000). The second antibody used in the experiment included: Goat Anti-Rabbit IgG H&L (1:5000, ab96899, Abcam, Goat Anti-Mouse IgG H&L (1:5000, ab96879, Abcam).
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8

Decalcification and Histological Analysis of Osteochondral Regeneration

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Formalin-fixed samples were decalcified in Calci-Clear Rapid solution (National Diagnostics, GA, USA) for 24 h at RT. Specimens were dehydrated through increasing concentrations of ethanol, followed by paraffin embedding. Samples were sectioned at a thickness of 7-μm and stained with hematoxylin-eosin (H&E), safranin O, and toluidine blue according to standard protocols. Immunohistochemistry for GFP, type II collagen, and type I collagen in BMSCs-laden samples was performed using primary antibodies for GFP (sc-9996, dilution ratio 1:200, Santa Cruz Biotechnology), anti-collagen type II (ab34712, dilution ratio 1:200, Abcam), and type I collagen (NBP2-46874, dilution ratio 1:100, Novus Biologicals, CO, USA). Secondary antibodies were Goat Anti-Mouse IgG H&L DyLight 488 (ab96879, dilution ratio 1:500, Abcam) and Goat anti-Rabbit lgG (H + L) DyLight 594 (35561, dilution ratio 1:1000, Invitrogen). Quantitative histomorphological analysis was carried out by five blinded researchers to evaluate osteochondral regeneration using the modified O’Driscoll scoring system57 .
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9

Characterization of Human Skin-Derived Stem Cells

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The hESCs from human skin were purchased from Otwo Biotech Inc. (Shenzhen, China) and cultured in EpiLife medium (Gibco, M-EPI-500-CA) supplemented with 1% human keratinocyte growth supplement (HKGS) (S-001-5). Cell phenotype was detected by flow cytometry. Briefly, after the cells were fixed, permeabilized and blocked, they were incubated with CK19 and ITGβ1 for 30 min, followed by incubation with goat anti-mouse secondary antibody for 30 min. The fluorescence was detected by a flow cytometer. The antibodies including anti-cytokeratin 19 (CK19; ab7754), anti-integrin beta-1 (ITGβ1; ab24693) and goat anti-mouse IgG (H + L) (ab96879) were obtained from Abcam.
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10

Immunofluorescence Visualization of MRE11A

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Cells were fixed in 4% paraformaldehyde, permeabilized with 0.05% Triton X-100, and incubated with primary antibodies to MRE11A (Abcam, ab214) at 4°C overnight. Incubation with secondary antibodies was performed at room temperature for 1 hr using Alexa Fluor 488 labeled goat anti-mouse (Abcam, ab96879). Images were analyzed using the LSM710 microscope system with ZEN 2010 software (Carl Zeiss) and a 63× oil immersion objective (Carl Zeiss). Image analysis procedures were performed blinded.
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