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1

Western Blot Protocol Optimization

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Cell lysate was resolved by SDS-PAGE, transferred to nitrocellulose membrane, and blocked with 5% non-fat dry milk in Tris-buffered saline and Tween-20 (TBS-T). The membrane was incubated with primary antibody overnight at 4°C, followed by peroxidase-conjugated secondary antibody for 1–2 h, and finally developed with the enhanced chemiluminescence (ECL) system (Beyotime Institute of Biotechnology, Nanjing, China). Antibodies used in the present study were listed in Table S3.
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2

Ovarian Cancer Cell Protein Analysis

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Ovarian cancer cells were disrupted using cell lysis buffer (Promega) on ice for 30 min and centrifuged at 12000 rpm for 30 min. The supernatant was transferred into the new centrifuge tube, and the concentration of protein samples was detected using the BCA-200 Protein Assay kit (Pierce, Rockford, IL, USA). Protein samples were separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) gel and transferred to the polyvinylidene fluoride (PVDF) membrane (Millipore). The non-specific sites in the membrane were blocked using 5% skim milk for 1 h, followed by incubation with primary antibodies and horseradish peroxidase (HRP)-labeled secondary antibody. The blots were visualized using the enhanced chemiluminescent (ECL) system (Beyotime, Shanghai, China). The primary antibodies, including phosphorylated extracellular regulated MAP kinase (p-ERK; ab214036), ERK (ab17942), p-MAP kinse-ERK kinase (p-MEK; ab96379), MEK (ab178876) and GAPDH (ab181602) were purchased from Abcam (Cambridge, MA, USA).
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3

Western Blot Analysis of ABC Transporters

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Tumor tissues were lysed using 400 µl RIPA (Beyotime Institute of Biotechnology) at 4°C for 15 min, and the protein concentration was measured using a bicinchoninic acid assay kit (Sigma-Aldrich; Merck KGaA). 15 µl total protein per lane was separated by 10% SDS-PAGE and transferred onto a polyvinylidene fluoride membrane (Invitrogen; Thermo Fisher Scientific, Inc.) Τhe membranes were blocked with 5% skim milk for 1 h at room temperature and washed 3 times with TBST for 5 min each. Subsequently, the membranes were incubated with primary antibodies against P-gp (1:800), MRP1 (1:30) or MRP5 (1 µg/ml) at 4°C overnight. The membranes were washed 3 times with TBST for 5 min each between incubations. The membrane was incubated with rabbit IgG secondary antibody (1:5,000; ZB-2301; Origene Technologies, Inc.) at 4°C for 1 h. The bands were visualized via an enhanced chemiluminescence (ECL) system (Beyotime Institute of Biotechnology). Protein bands were quantitated using ImageJ software v.1.52T (National Institute of Health) and sample loading was normalized by GAPDH protein level in each sample.
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4

Protein Extraction and Western Blot Analysis

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Cultured cells were lysed in RIPA buffer (Beyotime Inc., NanTong, China). Protein concentration was identified using the Bradford reagent (Beyotime Inc.). We then performed electrophoresis of protein extracts and subsequent blotting as previously described [91 (link), 92 (link)]. In brief, Equivalent amounts of protein (30 μg) were separated by SDS-PAGE gels and transferred to polyvinylidene difluoride (PVDF) membranes (Bio-Rad, Hercules, CA, USA). The membranes were then immunoblotted with the appropriate primary antibodies against Smad3 or p-Smad3 (Santa Cruz Biotechnology, Santa Cruz, CA), at 4°C for overnight, and subsequently were incubated with HRP conjugated anti-mouse or anti-rabbit secondary antibodies at room temperature. Signals were detected using an enhanced chemiluminescence (ECL) system (Beyotime, China) on Kodak X-ray film. Equal protein loading was assessed by the expression of β-actin. The protein bands were quantified using the BioRad Quantity One software package.
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5

Quantitative Analysis of Folate Transporters

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Western blot analyses were performed to evaluate target protein expression. Briefly, protein lysates (~20 μg per sample) were loaded and run on 10% sodium dodecyl sulfate (SDS)-polyacrylamide gels, transferred to NC membranes (Millipore Corporation, MA, USA), and blocked with 5.0% nonfat milk for 3 h. The membranes were incubated with primary antibodies overnight at 4°C and then washed with Tris-buffered saline Tween-20 (TBST) three times for 10 min. Afterwards, membranes were incubated with the secondary antibodies for 2 h at room temperature and washed again. The bands on the membranes were visualized using an ECL system (Beyotime Institute of Biotechnology). Finally, membranes were exposed with an Odyssey infrared imaging system (LI-COR Biosciences, NE, USA). The following antibodies were used: anti-human FOLR1 (1:5000 dilution; Abcam, Cambridge, UK; CAT# ab221543), anti-human PCFT (1:300 dilution; Santa Cruz Biotechnology, Dallas, TX; CAT# sc-393460), anti-human RFC (1:300 dilution; Santa Cruz Biotechnology; CAT# sc-390948), anti-human GAPDH (1:5000 dilution; Abcam; CAT# ab181602), and HRP-labeled secondary antibodies (1:5000 dilution; Proteintech Group, Rosemont, IL).
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6

Protein Expression Analysis in Liver Tissue

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Liver tissue samples were homogenized in RIPA buffer (Beyotime, Shanghai, China) and centrifuged (12,000 rpm, 4°C) for 20 min. The obtained supernatants (protein extracts) were used for the biochemical analysis. Equal amounts of total protein were separated by 10% SDS-PAGE and transferred to PVDF membrane (St. Louis, MO, USA). The membrane was blocked with 5% nonfat milk and incubated with anti-TGFβ antibody at 4°C overnight and washed with Tris-buffered saline. Then, the membrane was again incubated with a secondary IgG-HRP antibody for 2 h at (room temperature). Finally, the protein bands were detected by ECL reagent (Beyotime, Shanghai, China) with an ECL system (Tanon 5200, Beijing, China).
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7

Immunoblotting Analysis of Apoptosis Signaling

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Cells were lysed by radio immunoprecipitation assay lysis buffer and proteins (30 μg) were separated on 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis and then transferred onto polyvinylidene fluoride membranes (Millipore). After blocked with blocking buffer (Beyotime) at room temperature for 30 min, the membranes were incubated with primary antibodies against p-Akt (1:1000; #4060, cst), Akt1 (1:1000; #2938, cst), NF-κB p65 (1:1000; #8242, cst), NF-κB p-p65 (1:1000; #ab86299, Abcam), cleaved caspase-3 (1:1000; #9664, cst), caspase-3 (1:1000; #9662, cst), GSDME (1:1000; ab215191, Abcam) and GAPDH (1:1000; #ab181602, Abcam) at 4 °C overnight. After incubation, the membranes were washed and incubated with HRP-conjugated secondary antibodies at room temperature for 2 h and visualized using the ECL system (Beyotime). Protein levels were normalized to GAPDH.
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8

Western Blot Analysis of Stem Cell Markers

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The cells and tissue samples were lysed in RIPA buffer (Solarbio, #R0020, China) supplemented with protease inhibitors. Equal amounts of protein were separated with 10% SDS polyacrylamide gel (YEASEN, #20325ES62, China) and then transferred to PVDF membranes (Millipore, #IPVH00010, USA). After blocked with 5% skim milk at room temperature for 1 hour, the membranes were subject to relevant primary antibodies specific for Olig2 (1:1000, Affinity #DF8004, USA), CD133 (1:2000, Affinity, #AF5120, USA), Nanog (1:2000, CST, #3580 S, USA), Oct4 (1:2000, CST, #2750 S, USA), Flag (1:2000, Affinity #T0003, USA), Ubiquitin (1:2000, CST, #3936, USA), β-actin (1:5000, Sigma, #AF441, USA) at 4 °C overnight and then incubated with respective second antibodies. The membranes were developed with the ECL System (Beyotime, #P0018S, China).
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9

Western Blot Analysis of Autophagy Markers

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BC cells were lysed on ice for 30 min using RIPA lysis solution (Beyotime, Shanghai, China). Samples of protein lysates were quantified, and separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) gel and transferred to the polyvinylidene fluoride (PVDF) membrane. The PVDF membrane was probed with primary and secondary antibody after blocking for 1 h with non-fat milk powder. The primary antibodies include anti-LC3 (ab51520), anti-P62 (ab155686), anti-DUSP7 (ab95960) and anti-glyceraldehyde-3-phosphate dehydrogenase (anti-GAPDH; ab37168). The specific primary antibodies and the secondary antibody (ab205718) were obtained from Abcam (Cambridge, MA, USA). The protein signal level was determined via the enhanced chemiluminescent (ECL) system (Beyotime).
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10

Western Blot Analysis of HGF Proteins

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HGFs were cultured onto each sample in 24-well plates at a density of 5 × 104 cells per well with or without CM for Western blot experiments. After 7 days of culture, HGFs were lysed in RIPA buffer and proteins were separated on 8% SDS-PAGE gels. Proteins were transferred onto polyvinylidene difluoride (PVDF) membranes which were blocked for 1 h by QuickBlock buffer (Beyotime, Jiangsu, China) at room temperature. Membranes were washed in TBST and probed overnight at 4°C with one of the following primary antibodies: collagen-I (ab34710, 1:2,000; Abcam, USA), vinculin (ab129002, 1:10,000; Abcam, USA), fibronectin (ab2413, 1:1,000; Abcam, USA), and β-actin (1:1,000, ab8227; Abcam, USA). Membranes were washed in TBST and incubated for 1 h with HRP-conjugated secondary antibodies at room temperature. Proteins were visualized using the ECL system (Beyotime, Jiangsu, China).
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