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Superscrip vilo cdna synthesis kit

Manufactured by Thermo Fisher Scientific

The SuperScript® VILO™ cDNA Synthesis Kit is a reagent kit designed for the conversion of RNA into complementary DNA (cDNA) for use in downstream applications. The kit includes necessary components for first-strand cDNA synthesis, including a reverse transcriptase enzyme, reaction buffer, and random primers.

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2 protocols using superscrip vilo cdna synthesis kit

1

Quantification of SNHG15, miR-153-3p, and ATG5 Expression

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Extractions of RNA were performed after cells were collected utilizing the GenElute Total RNA Purification Kit (Sigma‐Aldrich; Merck KGaA). Reverse transcription of total RNA (2.0 μg) was performed with SuperScrip®Vilo cDNA synthesis kit (Invitrogen). The comparative overexpression of SNHG15, miR‐153‐3p, and ATG5 were determined employing qPCR with a SYBR green I Master Mix kit (Invitrogen; Thermo Fisher Scientific, Inc.) in a 7500 real‐time PCR system (Applied Biosystems; Thermo Fisher Scientific, Inc.). The methods followed what was laid forth in the kit's manual. U6 was the intrinsic control of miR‐153‐3p. GAPDH was the intrinsic control of SNHG15 and ATG5. The following cycling procedure was used for qRT‐PCR: initial denaturation, 95°C, 10 min; 95°C, 20 s, 60°C, 15 s and 72°C, 20 s; 40 cycles. Expression was quantified using the formula 2 −ΔΔCq. Primer sequences: SNHG15:Forward primer: 5′‐CAACCATAGCGGTGCAACTGTGC‐3′, Reverse primer: 3′‐GGCTGAACCAAGTTGCAAGTCATG‐5; miR‐153‐3p:Forward primer: 5‐GTCAATTGAGCACGTGGC‐ CAC‐3; Reverse primer:5‐GACGTACGGACTGACGGACCAC3; ATG5:Forward primer: CACCGAGTGGATAATCTTTATGGCA Reverse primer:AAACTGCCATAAAGATTATCCACTC; U6:Forward primer:GGAAGTAGCACCTGATTAGC Reverse primer:TTGGAATACGAATIGGCCG; GAPDH:Forward primer:CTCACCGGATGCACCAATGTT Reverse primer:CGCGTTGCTCACAATGTTCAT.
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2

Quantification of circRNA, miRNA, and mRNA

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TRIzol reagent (Invitrogen) was used to extract RNA and SuperScrip VILO™ cDNA Synthesis Kit (Invitrogen) was used to reverse-transcript RNA to cDNA. Then, qRT-PCR was conducted using SYBR Green (Solarbio) in PCR system. Relative expression was normalized to β-actin or U6 and calculated with 2−ΔΔCt method. The sequences of primers were listed as follows: hsa_circ_0070934, F 5ʹ-GGGTGGTAATATCCGAGGTTCC-3ʹ, R 5ʹ-TTGTCTTGAGCTTTCCTGCCT-3ʹ; miR-136-5p, F 5ʹ-GCCGAGACTCCATTTGTTTTGAT-3ʹ, R 5ʹ-CAGTGCGTGTCGTGGAGT-3ʹ; PRAF2, F 5ʹ-CTGGACGACTTTGTTCTGGGG-3ʹ, R 5ʹ-GCTCAGGAGCGTATGAAGTGG-3ʹ; GAPDH, F 5ʹ-AAGGCTGTGGGCAAGGTCATC-3ʹ, R 5ʹ-GCGTCAAAGGTGGAGGAGTGG-3ʹ; β-actin, F 5ʹ-ATAGCACAGCCTGGATAGCAACGTAC-3ʹ, R 5ʹ-CACCTTCTACAATGAGCTGCGTGTG-3ʹ; U6, F 5ʹ-ATTGGAACGATACAGAGAAGATT-3ʹ, R 5ʹ-GGAACGCTTCACGAATTTG-3ʹ.
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