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13 protocols using pi3k p85

1

Investigating the Role of GPER in Cell Cycle and Apoptosis

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Cryptotanshione (CPT) obtained from National Institutes for Food and Drug Control (Beijing, China) was prepared into a 10 mM stock solution dissolved by DMSO and stored at -20°C for later use. MTT (KeyGEN BioTECH, Jiangsu, China), DMEM-High Glucose medium (Hyclone company), Fetal bovine serum (Corning Cell Gro, Australia), 0.25% trypsin (Gibco, ThermoFisher Scinetific Inc, USA). LipofectamineTM 2000 Reagent was from Invitrogen Inc, USA. GPER specific agonist G-1 and antagonist G-15 were obtained from Cayman Chemical (Michigan, USA). The primary antibodies were listed below: cyclin D, cyclin B and cyclin A, Bax, Bcl-2, caspase-3, PI3K (p85) and GPER (Abcam, USA), p-AKT (Ser473, Cell Signaling Technology, USA). GPER siRNA, non-target siRNA and PI3K inhibitor LY294002 were purchased from Santa Cruz Biotechnology, USA.
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2

Comprehensive Cell Signaling Reagents Protocol

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Dulbecco's modified Eagle's medium (DMEM) and foetal bovine serum (FBS) were obtained from Gibco. Earle's balanced salt solution (EBSS) and propranolol were purchased from Sigma‐Aldrich. Rapamycin (RAPA), 3‐methyladenine (3‐MA) and chloroquine (CQ) were obtained from MedChemExpress, and ZVAD‐FMK, necrostatin‐1, liproxstatin‐1, SB203580, SP600125, SC79 and 740Y‐P were purchased from SelleckChem. Then, these reagents were dissolved in dimethyl sulfoxide (DMSO) (MP Biomedicals or water and stored at −80°C. Primary antibodies against Akt, p‐Akt, p38 MAPK, p‐p38 MAPK, JNK, p‐JNK, Erk1/2 and p‐Erk1/2 were purchased from Cell Signalling Technology. Primary antibodies against alpha‐smooth muscle actin (α‐SMA), fibronectin (FN), LC3B, P62, p‐PI3K p85, PI3K p85, ATG9b, ATG9a, mTOR, p‐mTOR, ATG12, ATG5 and anti‐ubiquitin were procured from Abcam. Primary antibodies against beta‐actin, alpha‐tubulin, GAPDH and HRP‐conjugated secondary antibodies were obtained from Proteintech. DyLight 549‐conjugated and DyLight 488‐conjugated secondary antibodies were provided by Abbkine.
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3

Western Blot Analysis of Heart Proteins

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For the western blot analysis, hearts were lysed in RIPA buffer, 1 mM Na3VO4, 1 mM phenylmethylsulfonyl fluoride (PMSF), and protease inhibitors and then centrifuged at 12,000 rpm for 15 min at 4°C. Protein concentrations were determined with a bicinchoninic acid (BCA) protein assay (Beyotime, China). Aliquots of total heart extract (30–40 µg) were loaded onto SDS-PAGE gels of different concentrations and then transferred to PVDF membranes. The membranes were blocked in 5% nonfat dry milk solution in a triethanolamine-buffered saline with Tween 20 (TBST) and then incubated with commercial antibodies specific for Bax, Bcl-2, Beclin1, LC3, GAPDH (CST, CA, USA), p-mTOR, mTOR, p-AKT (s473), AKT1/2/3, and PI3K p85 (Abcam, CA, USA) at 4°C overnight. On the second day, the membranes were washed in TBST three times. Then, the membranes were incubated with horseradish peroxidase-conjugated secondary antibodies at a 1 : 5000 dilution at room temperature for 1 h. After incubation in an ECL (Pierce Biosciences, USA) solution, membranes were exposed to Syngene Gene Genius. The intensity of protein bands was semiquantified using image analysis software.
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4

Western Blot Analysis of Cell Signaling

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Equal amount of cell extracts were obtained from T47D/MCF7 single cells and T47D/MCF7 cell clusters. These were separated by 8 % SDS-PAGE and transferred to nitrocellulose membranes. After blocking with 5 % nonfat dry milk/Tris-buffered saline solution (TBS), the blots were incubated with anti-human plakoglobin (CST), PI3K p85 (Abcam), pAkt (phospho Ser473; CST), Bcl-2 (Abcam), Caspase-3 (Abcam), or β-actin (Abcam) antibodies at 4 °C overnight. The antigens were visualized by peroxidase-conjugated secondary antibodies and densitometry was performed by Advanced Image Data Analyzer software v4.5 (Raytek Scientific).
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5

CD19 and PI3K Interaction via PLA

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To investigate the interaction of CD19 and PI3K (p85), we used an in situ proximity ligation assay (PLA, Olink Bioscience, location). Jeko/BTZ cells were treated with BTZ, dasatinib, or their combination for 24 hr, fixed with 4% formaldehyde, and permeabilized with Triton-X100. Cells were incubated overnight with primary antibody directed against CD19 (Cell Signaling Technology) or PI3K p85 (Abcam), respectively. In situ PLA was performed according to the manufacturer's instructions. Each individual pair of proteins generated a spot that could be visualized using fluorescent microscopy. Images were taken using a Leica confocal laser scanning microscope.
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6

Berberine Biomarker Analysis Protocol

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Monoclone antibodies IR, PI3K P85, p-NF-κB p65, IKK, BACE-1, APP, α7nAChR and polyclone antibody Aβ were purchased from Abcam (Cambridge, MA, USA). Monoclone antibody p-Akt (Ser473), AKT, NF-κB, p-IKK, p-IRS-1(Ser307), and IRS-1 were purchased from Cell Signaling Technology (Boston, MA, USA). Insulin ELISA kit (EZRMI-13) and PVDF membrane (0.45 µm) were obtained from Millipore (Billerica, MA, USA). The cytokines of IL-1β, IL-18 and TNF-α were purchased from BOSTER (Wuhan, China) and the ACh kits (A105-1: tissue, A105-2: Serum) and the AChE kits (A024) were purchased from Nanjing Jiancheng Bioengineering Institute (Nanjing, China). The ladder marker was obtained from Thermo Scientific (Waltham, MA, USA). Finally, the GLU kit was purchased from Shanghai Mind Bioengineering Co., Ltd. (Shanghai, China). Berberine was obtained from Shanghai Yuanye Bio-Technology Co., Ltd. (99% pure, Shanghai, China). All other reagents purchased from located market were of analytical grade.
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7

Protein Expression Analysis by Western Blot

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Samples from each group contain equivalent total protein concentration. Total proteins were separated by sodium dodecyl sulfate (SDS) polyacrylamide gel electrophoresis (SDS-PAGE), using 8, 10 or 12% gels and a running buffer of 24 mM Tris–HCl, 0.19 M glycine, 0.5% SDS, pH 8.3. The electrophoretical proteins were transferred onto polyvinylidene difluoride (PVDF) membrane (Immobilon-P membrane; Millipore; Bedford, MA, USA) and probed with specific antibodies against α-SMA (1:1000, Abcam, Cambridge, UK), MMP9 (1:1000, Abcam), ALP (1:1000, Abcam), osterocalcin (1:1000, Abcam), IRβ (1:1000, Abcam), phospho-IRS1 (S312) (1:1000, Abcam), PI3K p85 (1:1000, Abcam), AKT (1:1000, Abcam), phospho-AKT (T308) (1:1000, Abcam) and phospho-AKT (S473) (1:1000, Abcam). Membranes were then incubated with appropriate horseradish peroxidase–conjugated secondary antibody. Specific antibody–antigen complex was detected using an enhanced chemiluminescence Western Blot detection system (Thermofisher Bioscience). The amounts of detected proteins were quantified by ImageJ software (NIH, MD, USA), and were normalized by β-actin protein.
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8

In Vitro Evaluation of Pioglitazone

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Pioglitazone hydrochloride was purchased from Jiangsu Hengrui Medicine Co., Ltd. (H20040267, Lianyungang, China). First Strand cDNA Synthesis Kits were bought from Promega Corporation (Cat #: #1622, Madison, USA). The SYBR Premix was provided by Applied Biosystems (Cat #: 4367659, Foster, USA). The primers were designed and synthesized by Sangon Biotech (Shanghai, China). Antibodies to GAPDH, PI3Kp85, Akt, p-Akt (ser473), GSK3β were purchased from Abcam, Inc. (Cat #: ab8245, ab189403, ab8805, ab18206 and ab32391, Cambridge, UK). The antibodies to IRS-1 and Glut4 were purchased from Cell Signaling Technology (Cat #: #3194 and #2213, Beverly, USA). Anti-Rabbit IgG-HRP and Anti-mouse IgG-HRP were from Santa Cruz (Cat #: sc-2030 and sc-200, California, USA).
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9

Protein Expression in Renal Tissue

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Renal tissues of 40 mg were lysed for protein extraction. Samples (50 μg) were separated by 8% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) gels and transferred to polyvinylidene fluoride membranes. The membranes after blocked were incubated with primary antibodies to Phosphoinositide 3-kinase (PI3K) (p85) (Abcam, Cambridge, MA, 1:1000), protein kinase B (AKT) (Signalway Antibody LLC, Maryland, USA, 1:1000), and α-SMA (Abcam, Cambridge, MA, 1:200) at 4 °C overnight. Then incubated with a HRP-labeled secondary antibody (Beyotime, China). The immunoreactions were detected with a gel imaging and analysis system (Tanon, Shanghai, China). The density values of bands were quantified using the software Image J (NIH, Maryland, USA).
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10

Western Blot Analysis of Signaling Proteins

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Samples and cells were collected for Western blotting as previously described [17 (link)]. Western blot analysis was performed using the following antibodies: PDK1 (#13037), Snail (#3879), p-AKT (#4060), AKT (#4685), GSK3β (#12456) and pGSK3β (#5558) were purchased from Cell Signaling Technology (Danvers, MA); UFM1 (ab109305), β-catenin (ab6302), GAPDH (ab8245), N-cadherin (ab18203), E-cadherin (ab1416), Vimentin (#92547), PI3KP110 and PI3KP85 (ab127617) were from Abcam (Cambridge, UK). Detailed methods are available in the Additional file 1.
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