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15 protocols using zb 2305

1

Western Blot Analysis of Cellular Proteins

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Cellular proteins were extracted for western blot analysis as previously described (20 (link)). The cell lysates were subjected to sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and run under standard conditions. Subsequently, the proteins were removed to polyvinylidene fluoride (PVDF) membranes. After blocking with 5% nonfat milk at room temperature for 1 h, the PVDF membranes were incubated with diluted primary antibodies SMA (1:400 dilution; sc-53142), SM22α (1:300 dilution; sc-51442) (both from Santa Cruz Biotechnology, Santa Cruz, CA, USA), FGF9 (1:800 dilution; ab9743), PDGFRβ (1:1,000 dilution; ab32570) (both from Abcam, Cambridge, MA, USA), and antibody against GAPDH (1:1,000 dilution; sc-47724; Santa Cruz Biotechnology) at 4°C overnight. The membranes were washed, further incubated for 1 h with horseradish peroxidase-conjugated secondary antibodies (anti-mouse and anti-rabbit, ZB-2305 and ZB-2305; both from Zhongshan Goldenbridge Biotechnology, Beijing, China) at 37°C. Subsequently, the membranes were detected with BeyoECL Plus (Beyotime Institute of Biotechnology, Haimen, China), and further analysis of protein band densitometry was facilitated by Quantity One software (Bio-Rad, Hercules, CA, USA).
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2

Western Blot Analysis of PINK1 and Parkin

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NP-40 Lysis Buffer (Beyotime, Shanghai, China) was used to extract total proteins as in our previous study19 (link). After extraction, the proteins were stored at −80 °C for subsequent western blot analysis. The analysis was performed as described previously57 (link). Briefly, proteins were separated by sodium dodecylsulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a polyvinylidene fluoride (PVDF) membrane, and then incubated with primary rabbit antibodies specific to PINK1 (1:1000, ab23707, polyclonal, Abcam, Cambridge, MA, UK), Parkin (1:1000, A0968, polyclonal, ABclonal, College Park, MD, USA), Hsp60 (1:5000, GTX110089, polyclonal, Genetex Inc., Irvine, CA, USA) and GAPDH (1:2000, Zhongshan Golden Bridge Biotechnology, Beijing, China) or mouse antibodies specific to COX IV (1:2000, GTX101499, polyclonal, Genetex Inc., Irvine, CA, USA) and β-actin (1:2000, Zhongshan Golden Bridge Biotechnology, Beijing, China). The samples were incubated with horseradish peroxidase (HRP) -conjugated secondary antibodies (1:20000; ZB-2305 and ZB-2301, Zhongshan Golden Bridge Biotechnology, Beijing, China), and developed with Immobilon Western Chemiluminescent reagents (Millipore, Billerica, MA, USA).
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3

Protein Extraction and Western Blotting

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Cells were washed with phosphate buffer saline (PBS) (Solarbio) and resuspended with RIPA cell lysis buffer (Solarbio) containing 1% phenylmethylsulfonyl fluoride (Solarbio) and 1% protease inhibitor cocktail (Sigma-Aldrich), incubated for 30 min on ice followed by centrifuged at 4 °C, 12,000 g for 15 min to collect supernatants. BCA Protein Assay Kit (Solarbio) was used to determine protein concentration. Supernatants were mixed with 5X loading buffer (Solarbio) and incubated at 100 °C for 5 min. Samples were resolved by SDS-PAGE and transferred to a PVDF membrane. The following antibody were used: β-tubulin (Beijing Zhong Shan Goldenbridge Biotechnology #TA-10, 1:1000), SRSF1 (Santa Cruz Biotechnology #sc-33652, 1:100) and horseradish peroxidase-labeled anti-mouse IgG antibody (Beijing Zhong Shan Goldenbridge Biotechnology #ZB-2305, 1:5000).
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4

Immunoblotting Technique with GAPDH, p53, and CDK1

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Antibodies against glyceraldehyde-3-phosphate dehydrogenase (GAPDH; sc166545, 1:3000) and the tumor protein, p53 (DO-1; sc-126, 1:1000), were purchased from Santa Cruz Biotechnology (Dallas, Texas, USA). Antibodies against cyclin-dependent kinase 1 (CDK1) (ab18, 1:1000 dilution) were purchased from Abcam (Cambridge, UK). Secondary horseradish peroxidase-conjugated antibodies against mouse immunoglobulin (Ig) G (ZB2305, 1:5000) were purchased from Zhongshan Golden Bridge Biotechnology. Co., LTD (Guangzhou, China).
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5

Synthesis and Characterization of 1-CP-U

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1-CP-U, synthesized according to the reported procedure (5 ), was generously provided by Ms. Ning Qizhi, who originally synthesized the agent. The chemical structure of 1-CP-U is demonstrated in Fig. 1. A total of 1.0 g of 1-CP-U crystal was weighed, totally dissolved it in ultrapure water facilitated by a 0.25 mol/l hydrochloric acid solution, and then the pH was adjusted to 4.0 by adding 0.25 mol/l sodium hydroxide solution. Calculating the concentration of the stock solution as 63.39 mM, it was diluted to the required concentrations in conditional medium and then stored at 4°C. The antibodies were as follows: Polyclonal rabbit anti-human Bax, MMP-2 and MMP-9, monoclonal mouse anti-human Bcl-2, (Wuhan Boster Biological Technology., Ltd.; A0315-2, BA0569, BA0573 and BM0200, respectively), and β-actin was purchased from Zhongshan Golden Bridge Biotechnology Co., Ltd., (Beijing, China; TA-09). The goat anti-mouse or anti-rabbit secondary antibodies were from Zhongshan Golden Bridge Biotechnology (ZB-2305 and ZB-2301).
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6

Immunoblotting Analysis of PDLSCs

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Collection and lysis of PDLSCs was conducted using RIPA Lysis Buffer which contains 1% protease inhibitor cocktail (Solarbio). Protein concentration was determined by a BCA kit (Thermo) and a total of 30 μg of protein was used for western blot analysis. The primary antibodies against RUNX2 (CST, #12556), GDF5(Abcam, RRID: ab93855), p38 MAPK(Affinity, Cat#AF6456), phosphorylated p38 MAPK (Affinity, Cat#AF4001), JNK(Affinity, Cat#AF6318), phosphorylated JNK(Affinity, Cat#AF3318), ERK(Affinity, Cat#AF0155), phosphorylated ERK(Affinity, Cat#AF1015), and β-ACTIN (Abcam, RRID: ab8226) diluted at 1:1,000 overnight at 4°C. Three washes were done using TBST. Afterwards, incubation of the membranes was done with the anti-rabbit and anti-mouse secondary antibodies (ZB-2301 and ZB-2305, Zhongshan Golden Bridge Biotechnology, Beijing, China) which is diluted at 1:10,000 at room temperature for 1 h. Visualization of the bands was done by enhanced chemiluminescence using the Bio-Rad system for detection (ChemiDocTM MP Imaging System, USA). Intensity of the bands was measured using ImageJ. β-ACTIN internal control was used to ensure equal protein loading.
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7

Quantitative Western Blot Analysis

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Western blot analysis was performed, as previously described (17 (link)). Total lysis of the cells was conducted with RIPA buffers (Thermo Fisher Scientific, Inc.) and protein concentration was determined with a bicichoninic acid protein assay kit (Thermo Fisher Scientific, Inc.). Equal quantities (50 µg) of proteins were separated and transferred onto polyvinylidine difluoride membranes. The membranes were blocked with 5% non-fat dried milk, following which the membranes were probed overnight at 4°C with the following antibodies: Rabbit monoclonal anti-Wnt3a (Ab2721 1:1,000), rabbit monoclonal anti-p-GSK-3β (Ab5558; 1:2,000), rabbit monoclonal anti-p-β-catenin (Ab9561; 1:2,000), rabbit monoclonal anti-GSK-3β (Ab12456; 1:2,000), rabbit monoclonal anti-β-catenin (Ab4176; 1:2,000) or mouse monoclonal anti-β-actin (Ab3700; 1:2,000) (all from Abcam, Cambridge, MA, USA). This was followed by incubation with either horseradish peroxidase-conjugated goat anti-rabbit (ZB-2301) or anti-mouse antibody(ZB-2305) (1:5,000; Zhongshan Golden Bridge Biotechnology, Beijing, China) for 2 h at room temperature. Immunoreactive proteins were visualized using enhanced chemiluminescence, and signal intensity was detected and quantified using Alpha Imager (Alpha Innotech Corporation, San Leandro, CA, USA).
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8

Western Blotting of SIRT1 in Oocytes

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For western blotting, 120 oocytes were lysed in 2×SDS sample buffer, boiled for 5 min at 100°C and then subjected to 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). The separated proteins were transferred to a polyvinylidene difluoride (PVDF) membrane. Membrane was blocked in Tris-buffered saline (TBS) containing 5% BSA and 0.1% Tween-20 for 2 h and then incubated with rabbit anti-SIRT1 antibody (1:1000) (9475; Cell Signaling Technology, Inc.) and mouse anti-β-actin antibody (1:1000) (BE0021; Easybio Technology, Beijing). After multiple washes in TBS containing 0.1% Tween-20 and incubation with horseradish peroxidase (HRP)-conjugated anti-rabbit IgG (1:1000) (ZB-2301; Zhongshan Golden Bridge Biotechnology, Beijing) and horseradish peroxidase conjugated anti-mouse IgG (1:1000) (ZB-2305; Zhongshan Golden Bridge Biotechnology, Beijing), respectively, finally, the membranes were washed 3 times in TBS containing 0.1% Tween-20 and visualized using Bio-Rad ChemiDoc XRS+.
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9

Western Blot Analysis of Mouse Oocytes

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A total of 200 mouse oocytes or zygotes per sample were mixed with SDS sample buffer and boiled for 5 min at 100°C for SDS–PAGE. Western blotting was performed as described previously (Zhang et al., 2004 (link)) using the antibody dilution anti-geminin (BS7535; Bioworld, St. Louis Park, MN) at 1:100; anti-actb (TA-09; Zhongshan Golden Bridge Biotechnology, Beijing, China) at 1:1000; anti-Cdt1 (07-1383; Millipore, Darmstadt, Germany) at 1:1000; anti–Pi-Chk1S345 (2348; Cell Signaling Technology, Danvers, MA) at 1:1000; and anti–Pi-H2AXS139 (9718; Cell Signaling Technology) at 1:1000. The membranes were subsequently incubated with horseradish peroxidase–conjugated secondary antibodies (1:2000; ZB2301 and ZB2305; Zhongshan Golden Bridge Biotechnology) for 1 h at 37°C. Protein bands were detected using Thermo Supersignal West Pico chemiluminescent substrate.
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10

Immunohistochemical Analysis of PES1, ERα, and ERβ

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Tissue microarray construction and IHC staining were performed as described previously48 (link). Rabbit polyclonal anti-PES1 (ab72539), mouse monoclonal anti-ERα (ab1104) and mouse monoclonal anti-ERβ (ab1103) were purchased from Abcam (Abcam, Cambridge, MA, USA). Mouse monoclonal anti-BRAFV600E (26039) was obtained from NewEast Bioscience (NewEast Bioscience, Malvern, PA, USA). These antibodies were used as primary antibodies at 1:50 dilution. Biotinylated goat-anti-rabbit and goat-anti-mouse IgG (ZB-2010 and ZB-2305, Zhongshan Golden Bridge Biotechnology, China) were used as secondary antibodies at 1:500 dilution.
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