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Maldi tof

Manufactured by Shimadzu
Sourced in Japan

The MALDI-TOF is a mass spectrometry instrument that uses Matrix-Assisted Laser Desorption/Ionization (MALDI) to ionize and analyze molecules. It is designed to accurately determine the molecular mass of a wide range of analytes, including proteins, peptides, lipids, and other biomolecules.

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7 protocols using maldi tof

1

MALDI-TOF Mass Spectrometry Protein Identification

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The band of RGA2 was excised from the SDS-PAGE and subjected for identification to the matrix-assisted laser desorption/ionization time of flight (MALDI-TOF) (Kratos analytical, shimadzu group company, japan) equipped with a 337 nm pulsed UV laser, a 1.7 m length flight tube and a curved field reflectron. A detail of MALDI-TOF procedure was described elsewhere (Dar et al. 2014 (link); Hassan et al. 2007 (link), 2008b (link)). The observed mass spectra, peak areas versus mass/electric charge (m/z) of mono-isotopic ions were calculated with MASCOT distiller software version1.1.2.0 (Matrix Science, London, UK).
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2

Proteomic Profiling of Monocyte-Derived Dendritic Cells

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To minimize individual differences and obtain sufficient quantity of proteins for 2‐D gel, the protein extracts of 7 preparations of mDCs from seven healthy individuals were combined after cell characterization to form a pool of protein extracts. The 2‐D gels were obtained according to our previous protocol.25 The resulting peptides from 2‐D gel were extracted with TFA/acetonitrile/water, and the peptide mixtures were analyzed by MALDI TOF (Shimadzu) using α‐cyano‐4‐hydroxy‐cinnamic acid as a matrix on a plate with delayed extraction or Q‐TOF Ultima Global (Waters). Identification of the proteins using these mass fingerprinting data was undertaken using the Mascot software (Matrix Science).
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3

MALDI-TOF Analysis of Gliadin Peptides

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Degradation of the 33-mer and 13-mer gliadin peptides by B. cereus was tested by a XIMA Performance (Shimadzu, Kyoto, Japan) MALDI–TOF as described previously [23 (link)] with modifications. MALDI–TOF used was a XIMA Performance (Shimadzu, Kyoto, Japan). Peptide solutions were mixed with 1 μL of matrix solution on a 384-well target plate. Measurements were performed in reflection mode with an acquisition mass range of 500−5000 Da. Peptide Calibration Standard from Shimadzu was used to calibrate the data of the 33-mer peptide and its modified forms.
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4

Synthesis and Characterization of Oxytocin Analogs

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As described in Table 1, high purity of OXT, AVP, OTP, and CPT were synthesized by AnyGen (Gwangju, Korea) using solid-phase peptide synthesis. The purity and molecular masses of the peptides were determined using high-performance liquid chromatography (HPLC) and matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF) (Shimadzu, Kyoto, Japan). Desmopressin was obtained from Tocris Bioscience (Bristol, UK). The freeze-dried peptide powders were kept frozen and dissolved in DMSO (for in vitro receptor functional assays) or pure water (for in vivo experiments and for cell viability assays) before use. The purity of the synthetic peptides was proved to be over 98%. The purity of Desmopressin was more than 95% according to the manufacturer’s instructions.
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5

Synthesis and Characterization of CPT

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As described in Table 1, high purity of CPT were synthesized by AnyGen (Gwangju, Korea) using solid-phase peptide synthesis. The purity and molecular masses of the peptides were determined using high-performance liquid chromatography (HPLC) and matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF) (Shimadzu, Kyoto, Japan).
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6

Time-Resolved Corona Formation on Nanodiamonds

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To demonstrate that corona formation is a time-resolved process, both aminated and pristine nanodiamonds (500 μg mL−1) were incubated with FN9-10 (250 μg mL−1) and BSA (Sigma Aldrich, USA) (2 mg mL−1). After 5 min, 30 min and 120 min of incubation samples were collected and centrifuged at 15 000g and 4 °C for 15 min, and then washed with deionized water. This process was repeated three times to remove unbound proteins from the surface of nanodiamonds. The pellets obtained were dispersed in 100 μL of deionized water. 0.7 μL of this dispersion was aliquoted and transferred to a MALDI-TOF plate. This was allowed to air dry before adding a sinapic acid matrix (Sigma Aldrich, USA). Measurements were performed using MALDI-TOF (AXIMA Performance, SHIMADZU, Japan) with a 355 nm Nb:YAG laser operating in linear mode with a 120 kV acceleration voltage and a laser repetition rate of 15. For each spectrum, 1000 laser shots were performed. MALDI-TOF enabled the identification of proteins by peptide mass fingerprinting (PMF) and will allow the differentiation of the specific protein bound to the nanodiamond surface.
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7

Lacrt Cleavage Half-life Determination

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To determine the cleavage half-life of Lacrt, the purified proteins (20 μg) were incubated in PBS at 37 °C for 72 h followed by SDS-PAGE analysis. Peptide sequence analysis was performed using MALDI-TOF (AXIMA Assurance, Shimadzu). Cleavage products were assigned by MALDI-TOF mass by comparison of measured with predicted mass to charge ratios (m/z) with +1 charge ionization ([M+H]+). For Western blotting of purified Lacrt, 50 μg purified protein was loaded onto 4–20 % Tris-HCl polyacrylamide gels; with blocking buffer at room temperature for 1 h and blotted with rabbit anti-N-terminal or anti-C-terminal (1:200) Lacrt antibody [42 (link)] overnight at 4 °C followed by blotting with IRDye800 Donkey anti-rabbit IgG (H+L) (Rockland) (1:3000) at room temperature for 1 h. Images were taken using the Odyssey infrared imaging system (Li-Cor, Lincoln, NE).
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