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5 protocols using af594 goat anti mouse

1

Immunofluorescence Staining of Tissue Sections

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Samples were dewaxed, rehydrated, antigen retrieved and blocked as per immunohistochemical protocol. The primary antibodies were applied overnight at 4 °C (PCK; DAKO, Cat.Z0622, 1:600 dilution and GCTM-5; Millipore Cat.MAB4365, 1:100 dilution). Staining was detected with Alexa Fluor® dyes goat anti rabbit AF488 and goat anti mouse AF594 (Life Technologies, Cat.A11005 and Cat.A11008, 1:400). Note that all antibodies were diluted in DAKO’s antibody diluent (Dako, Cat S2022). Samples were counterstained with DAPI and sealed by a coverslip using an aqueous mounting media (Gelvatol). Positive controls (normal livers with bile ducts) and negative controls for antigen, primary and secondary antibodies were included for all immunofluorescence experiments.
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2

Immunocytochemical Staining of ZR75-1 Cells

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For the immunocytochemical staining, the ZR75-1 cells were cultured in monolayer or suspension for 1, 3, and 7 days. Cells were dissociated with a non-enzymatic dissociation buffer, washed twice, and then re-suspended, at a concentration of 0.5 × 106 cells/mL. Cells were spun onto the microscopy slides using a Thermoscientific Cytospin 4, at 1000 rpm, for three minutes. Cells were then fixed with 4% PFA for 10 min, washed twice, permeabilized with 0.01% Triton-X for 5 min at room temperature, washed twice, and then blocked using 3% BSA, in PBS, for 20 min. Samples were incubated with primary antibodies, overnight, in a blocking solution, at 4 °C. The following day, the slides were washed, twice, with PBS and incubated for an hour with the corresponding conjugated secondary antibodies (goat anti-mouse-AF594 (Life Technologies, A11012) and goat anti-rabbit-AF488 (Life Technologies, A10667). Samples were washed twice and mounted with the DAPI-slow fade mounting solution (Vector Laboratories, H-1200, Burlingame, CA, USA). Confocal imaging was performed using a Zeiss LSM880 (Zeiss, Thornwood, NY, USA). Images were obtained at 40× magnification and analyzed using Zen software (Zeiss). The negative controls were the unlabeled samples and samples stained with only the secondary antibodies.
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3

Immunofluorescent labeling of proteins

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Secondary antibodies were Alexa Fluor (AF) 488 goat anti-rabbit (CST, 44125), AF 594 goat anti-rabbit (Invitrogen, Thermo Fisher Scientific, A-11012), AF 594 donkey anti-goat (Novus, NBP1-75607), AF 594 goat anti-mouse (Invitrogen, Thermo Fisher Scientific, A-11032), and HRP goat anti-rabbit (Abcam, 205718).
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4

Quantifying Lymph Node Immune Cell Subsets

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Frozen lymph node sections 4 μm thick were fixed in 1% paraformaldehyde (Sigma, St. Louis, MO), stained for 1 hour with rat anti-CXCR5 (RF8B2, BD Bioscience), mouse anti-CD4 (RPA-T4, BD Bioscience) and rabbit anti-CD20 (Abcam, Cambridge, MA), then treated for 30 min with secondary antibodies AF488 donkey anti-rat, AF647 chicken anti-rabbit and AF594 goat anti-mouse (Invitrogen, Grand Island, NY). Stained slides were viewed on a Leica DM5000B fluorescent microscope and 10 to 15 randomly selected areas were imaged using Qwin Leica FW4000 software (Leica). Follicular and extrafollicular tissue areas within the images were defined morphologically by CD20 staining, and percentages of CXCR5+, CD4+, and CXCR5+CD4+ tissue area determined by quantitative image analysis (QWin Pro; v.3.4.0, Leica).
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5

Immunofluorescence Staining of Lung, Brain, and Heart Tissues

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The slides were permeabilized and blocked with 10% donkey serum, 2% BSA, 0.05% tween in PBS for 1 hr at room temperature. For lung cells, the slides were incubated with primary antibodies anti-CD31 (BD Pharmingen, Cat#: 550274, 1:25) and anti-RAGE (Abcam, Cat#: Ab3611, 1:3200) at 4°C overnight. The brain ECs were incubated with primary antibodies anti-CD31 (BD Pharmingen, Cat#: 550274, 1:25) and anti-PTN (Santa Cruz Biotechnology, Cat#: sc-74443, 1:3200) at 4°C overnight. For the heart samples, primary antibodies anti-AQP7 (Novus Biologicals, Cat#: NBP1-30862, 1:3200) and anti-CD31 (BD Pharmingen, Cat#: 550274, 1:25) were used and incubated at 4°C overnight. The next day, slides were washed and incubated with the fluorescence-conjugated secondary antibody (AF488 donkey anti-rat 1:300, Invitrogen Cat#: A-21208; AF594 donkey anti-rabbit 1:300, Invitrogen Cat#: A-21207; AF594 goat anti-mouse 1:300, Invitrogen Cat#: A11032), followed by washing with 1x PBS. Cells were stained with DAPI and mounted on ProLong Gold mounting medium (Invitrogen, Cat#: P36934). Images were taken with a confocal microscope LSM880 (Zeiss) and analyzed by Zen software (Zeiss).
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