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Anti α tubulin

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Anti-α-tubulin is a monoclonal antibody that specifically binds to the α-subunit of the tubulin protein, a key structural component of the cytoskeleton. This antibody is a useful tool for the detection and localization of α-tubulin in various cell and tissue samples using techniques such as Western blotting, immunohistochemistry, and immunocytochemistry.

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12 protocols using anti α tubulin

1

Phospho-Akt Immunoblotting in Drosophila

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Each sample contained three flies that were homogenised directly in 75μl 2x Laemmli SDS-PAGE buffer. The primary antibodies used were anti-phospho-Akt (Cell Signalling Technologies 4054, used at 1:1000), anti-total-Akt (Cell Signalling Technologies 4691, 1:1000), and anti-α-tubulin (Developmental Studies Hybridoma Bank 12G10, 1:5000). The secondary antibodies used were anti-rabbit IgG (Cell Signalling Technologies 7074, 1:5000) and anti-mouse IgG (Cell Signalling Technologies 7076, 1:10,000). The chemiluminescent substrate used was SuperSignal West Pico PLUS (Thermo Scientific 34580). Blots were imaged using a Fuji LAS-3000 luminescent image analyser and images analysed in ImageJ.
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2

Quantitative Western Blotting Analysis

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Western blotting was carried out as previously described, using LI-COR Odyssey (LI-COR Biosciences) (Liu and Secombe 2015 (link)). Antibodies used were anti-phospho-histone H3 (#9701, 1:1000; Cell Signaling Technology), anti-histone H3 (#39763 or #39163, 1:5000; Active Motif), anti-α-tubulin (1:5000; Developmental Studies Hybridoma Bank, University of Iowa). The rabbit polyclonal KDM5 antibody was raised to amino acids 1418–1760 and has been previously published (Secombe et al. 2007 (link)).
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3

Protein Expression Analysis in Fly Lysates

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Cell lysates were obtained from approximately ten male or female flies by grinding in 300 μl RIPA buffer supplemented with proteinase and phosphatase inhibitors. The lysates were centrifuged at 13,000 rpm for 20 min at 4°C, and protein concentrations were determined using the BCA method.
Samples containing 30–50 μg total protein were resolved on a 10% SDS-PAGE gel and transferred to a nitrocellulose membrane. The membrane was blocked with 5% skim milk in 1× TBS-T and incubated with the following primary antibodies: anti-TPM4 (1:100; Developmental Studies Hybridoma Bank, Iowa City, IA, USA), anti-ALK (1:250; Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-pALK (1:1000; Cell Signaling Technology, Danvers, MA, USA), and anti-α-tubulin (1:5000; Developmental Studies Hybridoma Bank). The membrane was incubated at room temperature with secondary antibodies at the appropriate dilutions. Quantitation of the western blot results is represented graphically using ImageJ software (National Institutes of Health, Bethesda, MD, USA).
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4

Quantifying Alpha-Synuclein in Yeast and Drosophila

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For αSyn quantification, total yeast protein extraction was performed using TBS buffer and glass bead lysis in the presence of protease and phosphatase inhibitor cocktail (Roche, Mannheim, Germany)7 ,72 (link). Protein quantification was performed using Micro BCATM Protein Assay Kit (Thermo Scientific, Rockford, USA). After extraction, a western blot was performed following standard procedures. Antibodies used: 1:5000 αSyn (Purified Mouse Anti-α-Synuclein, Clone 42/α-Synuclein (RUO), Catalog Number 610787, BD Transduction Laboratories, San Jose, CA, USA), 1:5000 PGK (Clone 22C5D8, Catalog number 459250, Life Technologies, Paisley, UK), 1:2500 GAPDH (Clone GA1R, Catalog number MA5-15738, Thermo Scientific, Rockford, USA), 1:500 CPY (Clone 10A5B5, Catalog number A-6428, Life Technologies, Paisley, UK).
For Drosophila samples, proteins were extracted in lysis buffer supplemented with Complete Protease Inhibitor Cocktail tablets from Roche (Basel, Switzerland). The protein extracts were obtained from 17 days old flies. Total protein was quantified using the DC Protein Assay, from Bio-Rad (CA, USA). For the western blot, we used anti-GFP (Clone 3H9, Catalog number 3h9-100), from Chromotek and anti-α-tubulin (Clone AA4.3, Catalog number RRID:AB_579793, Developmental Studies Hybridoma Bank, IA, USA).
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5

Quantifying 3xFLAG Protein in Ovary

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To assay 3xFLAG MH protein abundance in the ovary, we dissected 20 ovary pairs in 1X PBS and ground the material in RIPA buffer (Cell Signaling Technology, Danvers, MA), Protease Inhibitor Cocktail (Roche, Basel, Switzerland), and 2X PMSF (Cell Signaling Technology, Danvers, MA). To promote solubility, we incubated the lysate in benzonase (Sigma Aldrich, St. Louis, MO) for 1hr at 4C. We used 20μg of lysate and probed with 1:10,000 anti-FLAG (M2, Sigma Aldrich, St. Louis, MO) or 1:1000 anti-αTubulin (Developmental Studies Hybridoma Bank, Iowa City, IA) and 1:1000 anti-mouse HRP secondary antibodies (Kindle Biosciences, Greenwich, CT). We exposed blots with Kwikquant Western Blot detection kit and imaged with a Kwikquant imager (Kindle Biosciences, Greenwich, CT).
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6

Immunostaining and Confocal Microscopy

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Immunostaining was carried out as described previously [18 (link)]. The following antibodies were used: anti-synapsin (anti-SYNORF1, 1 : 50; Developmental Studies Hybridoma Bank), anti-arrestin (VC1, a kind gift of Professor H. Orri), anti-phosphohistone H3 (Ser10) (D2C8) (pH3) (1 : 500; Cell Signaling Technology), and anti-α-tubulin (1 : 20, Developmental Studies Hybridoma Bank). Confocal laser scanning microscopy was performed using a Leica TCS 4D (Leica Lasertechnik, Heidelberg) adapted for an inverted microscope (Leitz DMIRB). Images were processed using ImageJ software. p-H3 positive cells were counted by visual inspection of confocal z-stacks of images corresponding to the whole animal. In the corresponding graphs error bars represent standard error of the mean.
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7

Antibody Staining Immunofluorescence Protocol

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Mouse monoclonal anti-hemagglutinin (HA) antibody was from BioLegend (Clone 16B12, Cat. No. 901513). Polyclonal GFP antibody was from Novus Biologicals (Cat. No. NB600-308). Rabbit polyclonal anti-phospho cofilin antibody was from Cell Signaling Technology (Cat. No. C02-3311S). Mouse monoclonal anti-cofilin antibody was from Santa Cruz Biotechnology (Cat. No. sc-376476). Mouse monoclonal anti-actin antibody was a gift from Dr José Manuel Hernández (CINVESTAV-IPN). Alexa-Fluor 633 secondary antibody was from Invitrogen (Cat. No. A21052). 4′,6-diamidino-2-phenylindole (DAPI) and Phalloidin-Rhodamine reagents were from Thermo Fisher Scientific (Cat. No. D1306 and R415, respectively). Mouse monoclonals anti-α-tubulin and anti-c-MYC antibodies were from Developmental Studies Hybridoma Bank (clone 12G10 and 9E10, respectively). Antibodies were used at a 1:1000 ratio unless otherwise specified. Unless otherwise stated, chemical reagents were from Merck-Sigma-Aldrich.
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8

Immunofluorescence Staining of Drosophila Tissues

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Tissues from third instar larvae were processed as described previously [5 (link)]. The following primary and secondary antibodies were used at the indicated dilutions: anti-Dlg1 (RRID: AB_528203; 1:200), anti-Fasciclin III (RRID: AB_528238; 1:200), anti-Elav (RRID: AB_528217 and AB_528217; 1:200), anti-DE-cad (RRID: AB_528120; 1:200), anti-Crumbs (RRID: AB_528181; 1:200), anti-p120-catenin (RRID: AB_2088073; 1:200), anti-α-Tubulin (RRID: AB_579793; 1:200), anti-β-Tubulin (RRID: AB_2315513; 1:200), anti-LaminC (RRID: AB_528339; 1:500) and anti-βPS integrin (RRID: AB_528310; 1:200) from the Developmental Studies Hybridoma Bank (DSHB) (Iowa City, Iowa), anti-γ-Tubulin (T6557, Sigma Aldrich; 1:50), anti-GFP (G10362, Invitrogen; 1:500), anti-Rab5 (ab31261, Abcam; 1:200), anti-Rab11 (BD610656, BD Biosciences; 1:200), chicken-anti-Avl (a gift from D. Bilder, 1:500) and Cy2, Cy3- and Cy5-conjugated secondary antibodies (Jackson Immunoresearch). Tissues were counterstained with DAPI (1 μg/ml) and mounted in DABCO-Mowiol medium (Sigma-Aldrich).
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9

Anti-ATG2A Blotting in Human Macrophages

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For the anti-ATG2A blotting shown in Fig. 5, primary human macrophages were treated with IL-6 80 ng μl−1 for 24 h before being lysed. The primary antibody used was anti-ATG2A pAb (MBL Life Science) at 1:400. Other western blots were performed with anti-Drosophila Atg8 (courtesy Katja Köhler (University of Zürich)57 (link) and G. Juhasz (Eötvös Loránd University)58 (link), both used at 1:200) and anti-α-tubulin (Developmental Studies Hybridoma Bank 12G10, used 1:10,000). Immunofluorescence on fly cells was performed with fluorescein isothiocyanate-labelled anti-M tuberculosis (Invitrogen PA1-28997, used 1:50) and rabbit anti-GFP (Invitrogen A-11122, used 1:100). Immunofluorescence on human cells was performed with anti-V5 from Novus Biologicals (NB 600-381), 1:400.
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10

Co-immunoprecipitation and Western Blot Analysis

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Cells were lysed in lysis buffer composed of 25 mmol/L Tris-HCl, pH8.0, 150 mmol/L NaCl, 1 mmol/L EDTA, 0.5% IgepalCA-630, and protease and phosphatase inhibitors (Roche). The cell lysates were centrifuged (15,000 × g), at 4°C for 5 min. For co-immunoprecipitation assay, cell lysates were immunoprecipitated for 1 to 2 h with FLAG M2 Affinity Gel for FLAG-tagged proteins or anti-HA antibody followed by protein G/A-Agarose Suspension (EMD Millipore) for HA-tagged proteins. Immunocomplexes were then washed three times. All samples were denatured in 1x sample buffer (50 mmol/L Tris-HCl, pH6.8, 2% SDS, 5% 2-mercaptoethanol, 10% glycerol, and 0.01% bromophenol blue) for 5 min at 100°C. Proteins were electroblotted onto nitrocellulose membranes (GE Healthcare). The following primary antibodies were used: anti-LMP2 and anti-LMP7 from Santa Cruz Biotechnology, anti-α-tubulin from Developmental Studies Hybridoma Bank, anti-STAT1, anti-p-STAT1, anti-MAVS, anti-STING, anti-IRF3, and anti-p-IRF3 from Cell Signaling Technology, anti-p84 from GeneTex, anti-FLAG M2 from Sigma, anti-HA and anti-Myc from BioLegend. HRP-conjugated secondary antibodies (Thermo Fisher Scientific) were used for detection with Western ECL substrates (Thermo). Chemiluminescent signals were detected by film or ChemiDoc (Bio-Rad). Quantification was performed with ImageJ software.48 (link)
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