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12 protocols using hrp conjugated secondary antibody

1

Western Blotting Analysis of Synaptic Proteins

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For Western blotting analysis, antibodies against SNAP25 (Santa Cruz, sc-376713, 1:500), SNAP23 (Abcam, ab3340,1:500), cysteine string protein (Abcam, ab90499, 1:1000), tomosyn (Santa Cruz, Sc-136105, 1:1000), Hsc70 (Abcam, ab154415, 1:1000), Munc13-1 (Synaptic Systems, 126102, 1:1000), munc18-1 (Abcam, ab3451, 1:3000), synaptotagmin7 (Synaptic Systems, 105173, 1:1000), VAMP2 (Synaptic Systems, 104211, 1:1000), synaptotagmin1 (Synaptic Systems, 105-011, 1:1,000), complexin 1/2 (Synaptic Systems 122002, 1:500), syntaxin-1 (Santa Cruz, sc-12736, 1:2,000), and β-actin (Abcam, ab8227 1:5000) were used. HRP-conjugated secondary antibodies were obtained from Perkin-Elmer and used at the following dilutions: goat anti-mouse (1:10,000), and goat anti-rabbit (1:10,000). Images were analyzed for densitometry using ImageJ (available from http://rsbweb.nih.gov/ij/index.html). All statistical tests were performed using GraphPad Prism v.4.0 for Windows, (GraphPad Software, La Jolla, California, USA, www.graphpad.com).
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2

Protein Expression Analysis in RAECs

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Total protein samples from RAECs were prepared as previously descried [16 (link)], and were resolved by SDS-polyacrylamide gel electrophoresis (SDS-PAGE) before being transferred to polyvinylidene fluoride membranes. Membranes were incubated with antibodies against sEH, platelet endothelial cell adhesion molecule (PECAM-1), p38, phospho-p38, nuclear factor erythroid 2-related factor 2 (Nrf2), HO-1, and CYP2J2 or β-actin, and then incubated with HRP-conjugated secondary antibodies (followed by chemiluminescence reaction (PerkinElmer, Waltham, MA, USA)). The protein bands’ intensity was quantified using Scion image analysis software.
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3

Western Blotting of Autophagy Markers

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We performed Western blotting using previously established experimental methods [36 (link)]. SH-SY5Y cells were lysed, and the supernatant was collected. The total protein concentration was calculated using a Coomassie Plus protein assay kit (Pierce, Rockford, IL, USA). We took 50 µg of cell extract from each sample for electrophoresis analysis of the sodium dodecyl sulfate-polyacrylamide gel and then transferred the separated proteins to a polyvinylidene fluoride membrane. Next, the membrane was blocked and incubated with the primary antibody overnight at 4 °C. The next day, the membrane was washed, and HRP-conjugated secondary antibodies (PerkinElmer Inc., Boston, MA, USA) were added for 1 h at room temperature. Finally, specific protein signals were detected via the ECL substrate and chemiluminescent gel imager. PI3 kinase p100, Beclin-1, Atg 7, LC3, mTOR, phospho-mTOR, caspase 3, cleaved caspase 3, poly ADP ribose polymerase (PARP), cleaved PARP, SIRT1, β-tubulin, α-synuclein, and the β-actin antibody were all purchased from Cell Signaling Technology (Beverly, MA, USA).
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4

Evaluating THSG's Cytoprotective Effects

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The UB/OC-2 cells were purchased from Ximbio (London, UK). Gentamicin was obtained from Standard Chem & Pharm Co., Ltd (Tainan, Taiwan). THSG was purchased from MedChemExpress Company (Monmouth Junction, NJ, USA). MTT was obtained from VWR International (Radnor, PA, USA). LDH cytotoxicity assay kit, DCFDA, Hoechst 33258 dye, JC-1 dye, Annexin V, and PI were purchased from Enzo Life Sciences (Farmingdale, NY, USA). Primary antibodies targeting PARP, cytochrome c, β-actin, COX IV, cleaved caspase 9, cleaved caspase 3 were purchased from Cell Signaling Technology (Beverly, MA, USA). HRP-conjugated secondary antibodies were obtained from PerkinElmer Life Sciences (Boston, MA, USA). SOD activity assay kit and the cell fractionation kit were purchased from Abcam (Cambridge, MA, USA).
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5

Quantitative Analysis of SARS-CoV-2 Protein Expression

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HEK-293T cells, transiently transfected with SARS-CoV-2 plasmids or with empty control were collected, washed in ice-cold phosphate-buffered saline and subsequently lysed in ice-cold 50 mM Tris-HCl (pH 7.4), 0.25% sodium deoxycholate, 1% Nonidet P-40, 150 mM sodium chloride, 1mM sodium orthovanadate, 1mM sodium fluoride, 2.5 mM sodium pyrophosphate, 1mM EDTA, 1mM phenylmethylsulphonyl fluoride, and protease inhibitor cocktail (cat #539,134, Calbiochem, Merck KGaA, Darmstadt, Germany). Whole cell lysates were quantified using the Pierce BCA protein assay kit (cat. 23,227, ThermoFisher, Waltham, MA, USA) and 25 μg of total proteins were incubated at 95 °C for 10 min, loaded on SDS-PAGE gels and then transferred to Hybond-ECL membranes (Amersham, Biosciences Corp, Amersham, UK). The membranes were blocked with 5% milk/0.3% TBS-Tween 20 at 4 °C for 1 h and then probed with primary antibodies against GFP (1:1,000 dilution; cat. ab290, AbCam, Cambridge, UK) or Strep-tag II (1:1000 dilution; cat. ab184224, AbCam, Cambridge, UK) and β-Actin (1:6000 dilution; cat. A1978, Sigma-Aldrich, Darmstadt, Germany). HRP-conjugated secondary antibodies (Cat. NEF812001EA, Perkin Elmer, Waltham, MA, USA) were used at 1:10,000 dilution. The chemiluminescent signal was detected with enhanced chemiluminescence (ECL) (cat.32,106, ThermoFisher, Waltham, MA, USA) and subsequently autoradiography.
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6

Western Blot Analysis of GAS2 and Laminin

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Tissue samples were homogenized and lysed in RIPA (Bio-Rad Laboratories, Hercules, CA, USA) buffer, run on a 12% polyacrylamide gel, and wet transferred to Bio-Rad PVDF membrane (Bio-Rad Laboratories) according to the standard protocol and chemiluminescently visualized using HRP-conjugated secondary antibodies from PerkinElmer (Waltham, MA, USA). Anti-GAS2 (ab55076-100) from Abcam (Cambridge, MA, USA) and anti-laminin (L9393) from Sigma-Aldrich (St. Louis, MO, USA).
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7

Western Blot Analysis of Synaptic Proteins

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Mouse anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Millipore, MAB374, 1:20,000), mouse anti-SNAP25 (Santa Cruz, sc-376713, 1:500), mouse anti-syntaxin-1 (Santa Cruz, sc-12736, 1:2,000), mouse anti-N-methyl-D-aspartate receptor-1 (NMDAR1) (BD Pharmingen, 556308, 1:2,000), mouse anti-postsynaptic density-95 (PSD-95) (Neuromab, 75-028, 1:20,000), and rabbit anti-Gβ (Santa Cruz, sc-378, 1:15,000) were used. HRP-conjugated secondary antibodies were obtained from Perkin-Elmer and Jackson Immunoresearch and used at the following dilutions: goat anti-rabbit (1:20000), goat anti-mouse (1:10,000 for NMDAR1 and syntaxin, and 1:20,000 for PDS-95, GAPDH, and SNAP25) and mouse anti-rabbit light chain specific 1:7,500 (Gβ).
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8

Comprehensive Immunoblot Analysis of HER Family Signaling

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Immunoblot analysis was performed as previously described(16 (link)) with primary antibodies as follows: anti-HER2 (#2242), anti-phosphorylated HER2 (#2249), anti-Akt (#9272), anti-phosphorylated Akt (#4060), anti-Erk1/2 (#9102), anti-phosphorylated Erk1/2 (#4370), anti-EGFR (#4267), anti-phosphorylated EGFR (#3777), anti-phosphorylated HER3 (#4791) (all of which were obtained from Cell Signaling Technology, Danvers, MA, USA), anti-HER3 (M7297, DAKO, Glostrup, Denmark) and anti-α-tubulin (Sigma-Aldrich, St. Louis, MO, USA). Immune complexes were detected with HRP-conjugated secondary antibodies, a chemiluminescence detection system (Perkin-Elmer, Waltham, MA, USA) and an LAS-3000 instrument (Fujifilm, Tokyo, Japan).
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9

Western Blotting for Protein Analysis

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Western blotting was performed as described previously (31 (link)). Briefly, cell pellets were suspended in SDS lysis buffer. Frozen tumor tissues were homogenized in RIPA lysis buffer containing 1.0% NP40, 150 mmol/L NaCl, 50 mmol/L Tris-HCl (pH 8.0), 0.5% sodium deoxycholate, 0.1% SDS, and protease and phosphatase inhibitors. After centrifugation, supernatant was collected and protein estimation was performed by BCA assay. Equal amounts of protein were resolved on 10% SDS polyacrylamide gels, transferred to PVDF membranes, and blocked with 5% nonfat dry milk for 1 hour at room temperature. Thereafter, membranes were probed with primary antibodies against phosphorylated 5 adenosine monophosphate–activated protein kinase (pAMPK, Cell Signaling Technology 2535, 1:1,000), total AMPK (Santa Cruz Biotechnology sc-74461, 1:2,000), b-actin (Sigma A5316, 1:10,000), tyrosinase (Santa Cruz Biotechnology sc-20035, 1:1,000), MITF (Abcam C5 ab12039, 1:500), phosphorylated ERK (p-ERK, Cell Signaling Technology 9101, 1:1,000), ERK (Cell Signaling Technology 4695, 1:2,000), or tubulin [horseradish peroxidase (HRP)–tagged, Abcam ab21058, 1:10,000] overnight at 4°C. Membranes were washed, incubated with HRP-conjugated secondary antibody (PerkinElmer, 1:10,000), and then protein bands were visualized using enhanced chemiluminescence (PerkinElmer).
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10

Western Blot Analysis of JAK-STAT Signaling

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Cell pellets were lysed with RIPA buffer (Sigma-Aldrich) following the manufacturer’s instruction. SDS–polyacrylamide gel electrophoresis was performed using 4–20% Criterion TGX Stain Free Protein Gel (Bio-Rad, Hercules, CA), and proteins were transferred to poly-vinylidene difluoride (PVDF) Immobilion-p membrane (Merck-Millipore, Billerica, MA, USA) using wet/tank Bio-Rad blotting system. Membranes were blocked in I-block 2% (Invitrogen, Waltham, MA, USA), incubated overnight at 4 °C with primary antibodies and 1 h with the HRP- conjugated secondary antibody (PerkinElmer, Waltham, MA, USA). Bands were detected using Invitrogen™ iBright™ FL1500 Imaging System. The following primary antibodies were used: JAK1 Y1022/1023 (Cell Signaling Technologies, #3331), JAK2 Y1007 (MBS128333, MyBioSource, San Diego, CA, USA), STAT6 Y641 (Millipore, 06-937), STAT3 Y705 (Cell Signaling Technologies, #9145), STAT5 Y694 (Cell Signaling Technologies, #9351), STAT6 (#11290, Becton Dickinson, Franklin Lakes, NJ, USA), STAT3 (79D7) (Cell Signaling Technologies, #4904), STAT5 (Becton Dickinson #611834), GAPDH (GTX 8627408, Genetex, Irvine, CA, USA).
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