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10 protocols using apc rat igg2a

1

Multiparametric Flow Cytometric Analysis of Myeloid Splenocytes

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Splenocytes were aliquoted into FACS tubes (6 × 105 /tube) and centrifuged at 200 × g for 10 min. Cell pellets were resuspended in 80 µl FACs buffer (PBS buffer with 2% BSA and 0.10% sodium azide) and 20 µl of mouse serum. After 10 min incubation at RT, the cells were stained with antibodies for 30 min in the dark at 4°C. The cells were washed twice with FACS buffer and analyzed on a LSRII cytometer using Flow-Jo software (Tree Star). Antibodies used were Alexa-488 anti-NK1.1 (clone P136), Alexa-488 anti-CD45R (B220) (clone RA3–6B2), Alexa-448 anti-CD4 (clone GK1.5), Alexa-488 anti-CD8α (clone 53–6.7), Bv421 anti-CD11b (clone M1/70), BV605 anti-Ly6C (clone HK1.4), APC anti-Ly6G (clone1A8), PE anti-Ly6G (clone 1A8), Alexa 700 anti-F4/80 ( clone BM8), BV421 Rat IgGb, BV605 Rat IG2b, APC Rat IgG2a, and PE Rat IgG2a, Alexa700 Rat IgG2a (obtained from BioLegends); APC anti-SIGNR1 (clone 22D1) and APC hamster IgG (obtained from eBioscience). Gating strategy for identification of myeloid spleen populations is outlined in Suppl. Fig. 1. The number of each myeloid population/spleen was calculated from the % of the population determined by flow cytometry and the total spleen cell counts.
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2

Dendritic Cell Analysis in Murine Spleen and Tumor

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Dendritic cells number was determined in the spleens and tumor tissues by flow cytometry (BD Biosciences, San Jose, CA). The sacrificed mice were soaked in 75% alcohol for 10 minutes and spleens and tumor mass of approximately 5 × 5 mm were collected. Spleens were mechanically dissociated in culture dish and dissociated cells were filtered through a 200-mesh sieve (Solarbio science & technology Co. Ltd. Beijing, China). Splenocytes single-cell suspensions were prepared from each mouse after red blood cells lysis. Tumor tissues were incubated in 1 mL trypsinization buffer at 37°C for 40 minutes after mechanical dissociation. Medium containing serum was added to terminate the tumor tissues digestion and dissociated cells were filtered through a 0.3-μm filter. Subsequently, cells were counted and stained using PE anti-mouse CD11c (1:100, Biolegend, San Diego, CA) to select dendritic cells, FITC anti-mouse CD80 (1:50, Biolegend) or APC anti-mouse CD86 (1:100, Biolegend) to distinguish mature dendritic cells from the immature ones. PE Armenian Hamster IgG (1:100, Biolegend), FITC Armenian Hamster IgG (1:50, Biolegend) and APC Rat IgG2a (1:100, Biolegend) were used as isotype controls.
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3

Multiparametric Flow Cytometry of Immune Cell Populations

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FcR blocking was performed with FcR blocking reagent, mouse (Miltenyi Biotec). Antibodies used were anti-Ly-6B.2-Alexa Fluor 700 (Bio-Rad), anti-CD11b-APC, anti-Ly-6G Pacific Blue, anti-CD3-BV605, or anti-CD138-PerCP/Cy5.5 (BioLegend). Levels of apoptosis were assessed by TUNEL staining using the in situ bromodeoxyuridine (BrdU) DNA fragmentation kit (Abcam) followed by staining with anti-BrdU-APC (eBioscience) and flow cytometric analysis. Isotype controls were used accordingly: Alexa Fluor 700 Rat IgG2a, κ (clone RTK2758), APC Rat IgG2a, κ (clone RTK2758), APC Rat IgG2b, κ (clone RTK4530), BV605 Rat IgG2b, κ (clone 17A2), APC/Cy7 Rat IgG2c, κ (clone RTK4174), Pacific Blue Rat IgG2a, κ (clone RTK2758), PerCP/Cy5.5 Rat IgG2b, κ (clone RTK4530) (BioLegend). AbCTM anti-Rat/Hamster Bead kit (Molecular Probes, Thermo Fisher Scientific) was used for single-color compensation. Flow cytometry data were collected on an LSRII flow cytometer with BD FACSDiva software (BD Biosciences).
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4

Skin Wound Immune Cell Analysis

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Single cells digested from skin wounds were pre-incubated with purified anti-CD16/CD32 antibody (101301, BioLegend) (1.0 μg per 106 cells in 100 μl volume) for 5 to 10 min to block Fc receptors. The cell suspensions were then co-incubated with fixable viability dye (eFluor™ 780, 65-0865-14, eBioscience) and antibodies against surface markers CD45 (PE/Cyanine7, 147703, BioLegend), CD3 (PE, 100205, BioLegend), and F4/80 (FITC, 123107, BioLegend) at 1:400 dilution for 30 min at 4 °C in the dark (100 μl per antibody per sample). After fixation and permeabilization, cells were incubated with antibodies against intracellular marker CD68 (APC, 137007, Biolegend) at 1:400 dilution for 20 min at 4 °C in the dark (100 μl per antibody per sample). Isotype controls of CD45 (PE/Cyanine7 Rat IgG2b, κ, 400617, Biolegend), CD3 (PE Rat IgG2b, κ, 400607, Biolegend), F4/80 (FITC Rat IgG2a, κ, 400505, BioLegend) and CD68 (APC Rat IgG2a, κ, 400511, Biolegend) were used in same concentration. Flow cytometry analysis was performed using Attune Nxt flow cytometer (Thermo Fisher Scientific) and FlowJo (v10.8.1). The experiments were performed three times independently (n = 3).
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5

Multiparameter Flow Cytometry of Cell Surface Markers

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The following antibodies of cell surface molecules were used: Allophycocyanin (APC) anti-mouse CD45 (Thermo Fisher Scientific Cat# MCD4505, RRID:AB_10376146), anti-mouse CD31 (BioLegend Cat# 102410, RRID:AB_312905), anti-mouse CD166 (Thermo Fisher Scientific Cat# 17-1661-82, RRID:AB_2573170), anti-mouse CD200 (BioLegend Cat# 123810, RRID:AB_10900447), anti-mouse SCA1 (BioLegend Cat# 122511, RRID:AB_756196), anti-mouse CD105 (BioLegend Cat# 120414, RRID:AB_2277914); APC Rat IgG2a, κ isotype control antibody (BioLegend Cat# 400512, RRID:AB_2814702), APC Rat IgG2b, κ isotype control antibody (BioLegend Cat# 400612, RRID:AB_326556), APC Rat IgG1, κ isotype control (BioLegend Cat# 400412, RRID:AB_326518); Alexa Fluor 647 anti-mouse CD9 (BioLegend Cat# 124810, RRID:AB_2076037), Alexa Fluor 647 Rat IgG2a, κ isotype control antibody (BioLegend Cat# 400526, RRID:AB_2864284).
Cells (n=3 with cells from three different mice) were stained with antibodies or IgG isotype controls for 30  min at room temperature. Stained cells were analyzed on a FACSCalibur or BD LSR II flow cytometer (BD Biosciences). Positive cells were gated based on both unstained and isotype-matched IgG-stained cells. Data analysis was performed using FlowJo software (BD Biosciences).
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6

Macrophage Polarization Analysis by Flow Cytometry

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RAW264.7 cells in the logarithmic growth phase were spread to a 6-well plate at 106 cells/well. After at least 6 h, the cells were completely attached to the wall, and the lysate and control were added separately. After 24 h of treatment, RAW264.7 cells were stained with FITC anti-mouse F4/80 (clone: FJK-16s, Invitrogen, Waltham, Massachusetts), APC anti-mouse CD86 (clone: GL-1, Biolegend, San Diego, CA) and PE anti-mouse CD206 (clone: MR6F3, Invitrogen, Waltham, Massachusetts) according to the protocol of the antibodies (M1 macrophage: F4/80+CD86+, M2 macrophage: F4/80+CD206+) and subjected to flow cytometry (LSR II, BD). Detection of SIRPα on macrophages in spleen from mouse used FITC anti-mouse F4/80, APC anti-mouse CD11b (clone: M1/70, Biolegend, San Diego, CA), and PE anti-mouse SIRPα (clone: P84, Biolegend, San Diego, CA). All flow cytometry used to detect macrophage typing in this study was set up with an antibody isotype control group (PE Rat IgG2a, clone: RTK2758, Biolegend, USA; APC Rat IgG2a, clone: RTK2758, Biolegend, USA; FITC Rat IgG2a, clone: RTK2758, Biolegend, USA).
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7

Tumor Dissociation and Flow Cytometry

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Tumor tissues were harvested in RPMI Medium 1640 with 10% heat-inactivated FBS, 1% penicillin and streptomycin (all from HyClone™). Tumors were minced and incubated for 30 min in DPBS (Well-gene) with 0.5 mg/ml Collagenase IV (Sigma) at 37 °C. Tissues were squeezed through a 100 μm cell strainer (# 93100, SPL), re-filtered through a 70 μm cell strainer (# 93070, SPL) subjected for 5 min to Red Blood Cell Lysis Buffer (#10-548E, Lonza). Flow cytometry was performed to determine cell surface antigen expression by 30-min incubation on ice with pertinent antibodies. The following monoclonal antibodies were used: mouse-specific monoclonal antibodies used were PerCP/Cyanine5.5 anti-mouse CD45 (#103131, BioLegend), APC-anti-mouse CD8a (#100712, BioLegend) and corresponding isotype control mAbs PerCP/Cy5.5 Rat IgG2b (#400632, BioLegend) and APC Rat IgG2a (#400512, BioLegend). The cells were washed thrice with PBS containing 2% FBS and fixed in suspension with 4% paraformaldehyde and stored at 4 °C until analysis with a CytoFLEX flow cell counter (Beckman). We analyzed the data using FlowJo software.
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8

Skin Wound Immune Cell Analysis

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Single cells digested from skin wounds were pre-incubated with purified anti-CD16/CD32 antibody (101301, BioLegend) (1.0 μg per 106 cells in 100 μl volume) for 5 to 10 min to block Fc receptors. The cell suspensions were then co-incubated with fixable viability dye (eFluor™ 780, 65-0865-14, eBioscience) and antibodies against surface markers CD45 (PE/Cyanine7, 147703, BioLegend), CD3 (PE, 100205, BioLegend), and F4/80 (FITC, 123107, BioLegend) at 1:400 dilution for 30 min at 4 °C in the dark (100 μl per antibody per sample). After fixation and permeabilization, cells were incubated with antibodies against intracellular marker CD68 (APC, 137007, Biolegend) at 1:400 dilution for 20 min at 4 °C in the dark (100 μl per antibody per sample). Isotype controls of CD45 (PE/Cyanine7 Rat IgG2b, κ, 400617, Biolegend), CD3 (PE Rat IgG2b, κ, 400607, Biolegend), F4/80 (FITC Rat IgG2a, κ, 400505, BioLegend) and CD68 (APC Rat IgG2a, κ, 400511, Biolegend) were used in same concentration. Flow cytometry analysis was performed using Attune Nxt flow cytometer (Thermo Fisher Scientific) and FlowJo (v10.8.1). The experiments were performed three times independently (n = 3).
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9

Immunological Effects of IFN-γ on Macrophages

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The immunological activity of IFN-γ expressed by URB was evaluated by macrophages activation. RAW 264.7 macrophages were seeded into a 96-well plate (8 × 103 cells per well), and then incubated in 100 μl DMEM medium containing 10% FBS for 12 h. The bacterial culture supernatant with corresponding concentrations of IFN-γ (50–150 pg/ml) was added into the macrophages and incubated for 48 h. To detect the phenotype of macrophages, the treated RAW 264.7 macrophages were stained with corresponding antibodies: CD86-PE (Biolegend, Cat No. 105007, dilution ratio 1:100), CD80-BV421 (Biolegend, Cat No. 104725, dilution ratio 1:100) and CD206-APC (Biolegend, Cat No. 141707, dilution ratio 1:100) according to the manufacturer’s instructions and analyzed by flow cytometry. PE-Rat IgG2a (Biolegend, Cat No. 400507, dilution ratio 1:100), BV421-IgG (Biolegend, Cat No. 400935, dilution ratio 1:100) and APC-Rat IgG2a (Biolegend, Cat No. 400511, dilution ratio 1:100) were used for isotype control. After that, The NO detection kit (Beyotime, Cat No. S0021S) was used to detect the NO level in macrophage culture medium. Moreover, RAW 264.7 macrophages treated with different levels of IFN-γ were collected and used to co-incubate with tumor cells at a MOI ratio of 5:1 in 96-well plate for 12 h, and the tumor killing activity was evaluated with CCK-8 kit.
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10

Skin Wound Immune Cell Analysis

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Single cells digested from skin wounds were pre-incubated with purified anti-CD16/CD32 antibody (101301, BioLegend) (1.0 μg per 106 cells in 100 μl volume) for 5 to 10 min to block Fc receptors. The cell suspensions were then co-incubated with fixable viability dye (eFluor™ 780, 65-0865-14, eBioscience) and antibodies against surface markers CD45 (PE/Cyanine7, 147703, BioLegend), CD3 (PE, 100205, BioLegend), and F4/80 (FITC, 123107, BioLegend) at 1:400 dilution for 30 min at 4 °C in the dark (100 μl per antibody per sample). After fixation and permeabilization, cells were incubated with antibodies against intracellular marker CD68 (APC, 137007, Biolegend) at 1:400 dilution for 20 min at 4 °C in the dark (100 μl per antibody per sample). Isotype controls of CD45 (PE/Cyanine7 Rat IgG2b, κ, 400617, Biolegend), CD3 (PE Rat IgG2b, κ, 400607, Biolegend), F4/80 (FITC Rat IgG2a, κ, 400505, BioLegend) and CD68 (APC Rat IgG2a, κ, 400511, Biolegend) were used in same concentration. Flow cytometry analysis was performed using Attune Nxt flow cytometer (Thermo Fisher Scientific) and FlowJo (v10.8.1). The experiments were performed three times independently (n = 3).
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