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Mirna specific primer

Manufactured by RiboBio
Sourced in China, Japan

MiRNA-specific primers are small DNA sequences designed to selectively target and amplify specific microRNA (miRNA) molecules. These primers are an essential tool for the detection and quantification of miRNA expression levels in various biological samples using techniques such as real-time PCR or next-generation sequencing.

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13 protocols using mirna specific primer

1

Quantitative Analysis of miRNA and CircRNA

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For miR-342-3p, RNA was reverse-transcribed using miRNA-specific primer (Ribobio, Guangzhou, China). For circ_0006220, TADA2A, and GOT2, complementary DNA (cDNA) was synthesized using commercial Bio-Rad iScript kit (Bio-Rad, Hercules, CA, USA). qPCR reaction was implemented via commercial iQ SYBR Green Supermix reagents (Bio-Rad) and primers (Supplementary Table 1; all supplementary files are available online). The relative abundance of molecules was analyzed as 2 (-Delta Delta C(T))20) (link) and normalized to the references.
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2

Quantitative Analysis of RNA Transcripts

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Trizol was used to extract total RNA in accordance with the manufacturer's instructions. For miR‐1299, RNAs were reverse‐transcribed using a miRNA‐specific primer (Ribobio). For hsa_circ_0001925, kinesin family member 4A (KIF4A) and YY1, complementary DNA (cDNA) was synthesized using a commercial Bio‐Rad iScript kit (Bio‐Rad). qPCR reaction was enforced via commercial iQSYBR Green Super‐Mix reagents (Bio‐Rad) and primers (Table 1). The relative abundance of molecules was analyzed according to the 2−ΔΔCt method.17
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3

MiRNA Reverse Transcription and Quantification

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The total RNA was isolated by using RNAiso plus (Takara, Japan). MiRNA was reverse‐transcribed to cDNA by using the miRNA‐specific stem‐loop reverse‐transcription primer (Ribobio, China). The amount of target gene expression (2−ΔΔCt) was normalized via the endogenous small nuclear RNA U6 using miRNA‐specific primers (Ribobio). QRT‐PCR reaction conditions were obeyed by instructions of SYBR Green qPCR Mix (BioRad, Hercules, CA, USA).
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4

SALL4 and miRNA Expression Analysis

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Cells were dissolved in TRIzol reagent (Thermo Fisher Scientific, Waltham, USA) and total RNAs were obtained according to the manufacturer’s protocol and then quantified and synthesized into cDNA using an iScript cDNA Synthesis Kit (Bio-Rad, Hercules, USA) for SALL4 expression or using a High-capacity cDNA Reverse Transcription Kit (Thermo Fisher Scientific, Waltham, USA) for miRNA expression. Real-time PCR was performed using SYBR Green Super Mixes (Bio-Rad, Hercules, USA). GAPDH and U6 were used as endogenous controls for normalization. MiRNA-specific primers were purchased from Ribobio (Guangzhou, China). Relative levels of expression were normalized and calculated using 2−ΔΔCt method. Information on the primers is listed in supplemental file 1.
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5

Comprehensive RNA Isolation and qPCR Analysis

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Total RNA was isolated from sperm or GC2 cells using a Total RNA Isolation Kit (BEI‐BEI Biotech), and from embryos using an RNA Isolation Kit (cat. no., KIT0204; Invitrogen; Thermo Fisher Scientific, Inc.). For miRNA detection, complementary DNA (cDNA) was synthetized from total RNA using miRNA‐specific primers (RiboBio). For mRNA detection, cDNA was synthetized from total RNA using PrimeScript® RT Master Mix (Takara) reverse transcriptase, according to the manufacturer's instructions. cDNA was quantitated using RT‐qPCR with a Roche LightCycler® 96 Real‐time PCR system (Roche Diagnostics). Real‐time PCRs were performed in triplicate. β‐actin and U6 were used as endogenous controls for mRNA and miRNA, respectively. Relative expression was calculated using the comparative ∆∆Ct method. The primers for miRNA real‐time PCR were purchased from RiboBio Company. The other primer sequences are presented in Table S1.
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6

Quantifying miRNA and mRNA Expression

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Total RNA was isolated from cell lines with TRIzol (Invitrogen Life Technologies, Carlsbad, USA) according to the manufacturer’s protocol. A NanoDrop 2000 spectrophotometer (Thermo Scientific, USA) was used to measure RNA concentration. Reverse transcription reactions were performed with PrimeScript RT Reagent kit (Takara, Dalian, China), and quantitative real-time PCR (qRT-PCR) was performed using FastStart Universal SYBR Green Master (Roche, Mannheim, Germany) and the Step One Plus Real-time PCR system (Applied Biosystems, Singapore, Singapore). Expression was normalized to β-actin level. Primer sequences were as followed in Supplemental Table I. For miR-145 detection, miRNA isolated from cell lines using miRNA extract kit (Haigene, Haerbing, China), according to the manufacturer’s protocol. Reverse transcription reactions were performed with RevertAid First Strand cDNA Synthesis Kit (Thermo scientific, Lithuania, EU). miRNA-specific primers were purchased from RiboBio (RiboBio, Guangzhou, China), and the relative miR-145 expression level was normalized to U6. The 2-ΔΔCt method was used for relative quantification. All experiments were performed in biological triplicates, each in triplicates (n = 3).
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7

Quantification of miRNA Expression

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Total RNAs were extracted by TRIzol Reagent (Invitrogen). Total RNAs (2mg) was reverse transcribed using a reverse transcription kit (Thermo scientific). The miRNA specific primers (Ribobio) and Maxima SYBR Green/ROX qPCR Master Mix (Thermo scientific) were used for qRT-PCR to examine the relative quantification of miRNAs with the 7900HT Fast Real-Time PCR system (Applied Biosystems) and U6 was used as endogenous control. Each reaction was performed in triplicate, and analysis was performed by the 2−ΔΔCt method.
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8

miRNA Expression Analysis Protocol

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The total RNA was isolated using RNAiso (Takara, Dalian, China). miRNA was subsequently reverse‐transcribed to cDNA using the miRNA‐specific stem‐loop reverse‐transcription primer (Ribobio, Guangzhou, China). The amount of target gene expression (2−ΔΔCt) was normalized via the endogenous small nuclear RNA U6 using miRNA‐specific primers (Ribobio). The reaction conditions were performed according to the instructions from Ribobio Co., Ltd with SYBR Green qPCR Mix (BioRad, Hercules, CA).
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9

miRNA Expression Quantification Protocol

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The total RNA was isolated using RNAiso (Takara, China). miRNA was subsequently reverse-transcribed to cDNA using the miRNA-specific stem-loop reverse-transcription primer (Ribobio, China). The relative expression levels of miRNA were calculated using the 2-ΔΔCt method (25 (link)) and normalized to the internal control U6, using miRNA-specific primers (RiboBio, China). The reaction conditions were performed according to the instructions from Ribobio Co., Ltd with SYBR Green qPCR Mix (BioRad, USA).
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10

Quantitative PCR Analysis of miRNA

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Briefly, 2 μg of total RNA was reversely transcribed into cDNA using the Mir-X miRNA First-Stand Synthesis Kit (Takara, Shiga, Japan). Then, 2 μL of cDNA was used for quantitative PCR analysis that was performed on the Bio-Rad CFX96 Detection System (Bio-Rad, Hercules, CA) using the SYBR Premix EX Taq (Takara, Shiga, Japan) and miRNA-specific primers (Ribobio, Guangzhou, China). All reactions were performed in triplicate to remove any outliers. In addition, miR-191-5p and U6 were selected as the reference genes according to our previous study [31 ]. The miRNA expression was normalized to the mean of these two reference genes. The relative expressions of miRNAs were determined using the 2-dCt method.
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