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7 protocols using las 1000 ccd camera

1

Western Blot Protein Detection

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Protein samples were separated on 6% SDS-PAGE according to the method of Laemmli [16 (link)]. For immundetection, proteins were transferred to a polyvinylidene difluoride membrane (Immobilon-P; Millipore) using a semidry transfer unit (Hoefer TE77X semidry transfer unit). Blocking of the membrane was carried out in PBS (pH 7.4) with 5% skim milk for 1 h at room temperature or overnight at 4°C. After a washing step of 10 min in PBS (pH 7.4) with 0.05% Tween 20, membranes were incubated with mouse monoclonal anti-V5 antibody (1:5.000; Clone SV5-PK1 Acris) in PBS (pH 7.4) with 0.05% Tween 20 and 0.5% BSA. Subsequent detection occurred via peroxidase-coupled sheep anti-mouse antibody (1:5.000; GE Healthcare) and ECL Plus chemiluminescence substrate (Pierce) using a LAS-1000 CCD camera (Fuji Photo Film).
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2

Western Blot Analysis of SREBP-1c

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For immunoblotting of SREBP-1c, the nuclear protein extracts from each sample (10 μg/lane) were separated by 10% SDS-PAGE and blotted to a polyvinylidene difluoride transfer membrane (Amersham Hybond-P; GE Healthcare) in a semidry system. The membrane was incubated for 1 h in 5% fat-free milk, then overnight with the primary SREBP-1c antibody (2A4: sc-13551; Santa Cruz Biotechnology) diluted 1:1,000 in 5% BSA, 1× TBS, and Tween-20 and for 1 h with horseradish peroxidase-conjugated secondary antibody (anti-mouse; Cell Signaling) diluted 1:2,000 in 5% fat-free milk, 10× TBS, and Tween-20. The membrane was washed with TBS and Tween-20 2 × 5 min and 15 min after each incubation time. Proteins were visualized using an ECL Plus kit (Amersham Bioscience) and detected in an LAS-1000 CCD camera (Fuji).
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3

Immunoblotting Analysis of Estrogen Receptor Alpha

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For immunoblotting of ERα, cells were lysed in Ripa buffer and proteins from each sample (10 μg/lane) were separated by 12% SDS-PAGE and blotted to a polyvinylidene difluoride transfer membrane (Amersham Hybond-P; GE Healthcare) in a semidry system. The membrane was incubated for 1 hour in 5% fat-free milk, then overnight with the diluted 1:1000 primary ERα antibody (Hc-20: sc-543; Santa Cruz Biotechnology). Bound antibodies were detected with a secondary peroxidase-conjugated anti-rabbit (anti-rabbit; Cell Signaling) diluted 1:2000 in 5% fat-free milk, 10× TBS, and Tween-20. The membranes were washed with TBS and Tween-20 2× for 5 min and 15 min, respectively, after each incubation time. Proteins were visualized using an ECL Plus kit (Amersham Bioscience) and detected in an LAS-1000 CCD camera (Fuji). Membranes were mild stripped by using a volume of buffer (15 g glycine, 1 g SDS, 10 ml Tween 20 dissolved in 1 L distilled water adjust PH to 2.2) that covered the membrane and incubated at room temperature for 10 min. The incubation was repeated and the membranes were, washed twice in TBS-T and PBS for 10 min each and re-probed with anti- β-actin monoclonal antibody (β-actin 13E5, Cell Signaling Technology) diluted 1:1000 in TBS-T, to serve as a loading control.
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4

Western Blot Analysis of Proteins

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For Western blot analysis proteins were precipitated from cell lysates according to Wessel and Flugge [43] (link). Protein concentration was determined by the Dc Protein Assay (Bio-Rad). Per sample 75 µg total protein was separated by 6% or 8% SDS-PAGE [44] (link). After electrophoresis, the proteins were blotted onto a PVDF membrane (Immobilon P with a pore size of 0.45 µm, Millipore). The proteins were probed with either monoclonal mouse anti-V5 antibody (1∶5,000), polyclonal rabbit anti-HA antibody (1∶5,000) or monoclonal mouse anti-Hsp90 antibody (1∶1,000). Detection was carried out using peroxidase coupled sheep anti-mouse antibody (1∶5,000) or peroxidase coupled goat anti-rabbit antibody (1∶5,000) and the ECL Plus Western Blotting Substrate (Pierce) using the LAS-1000 CCD camera (Fuji Photo Film).
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5

Disulfide Bond Formation in scFv BL1

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The folding of the scFv BL1 was assessed by the recognition of its substrate, E. coli β-galactosidase, using a dot blot assay and whole-cell lysate as described previously (13 (link)). In short, different amounts of β-galactosidase were spotted onto a polyvinylidene difluoride (PVDF) membrane, and the membrane was subsequently incubated with cell lysate. To test if the correct disulfide bonds were formed in the scFv BL1, prior to the incubation with the immobilized β-galactosidase, cell lysates were reduced with 10% β-mercaptoethanol. Binding of the scFv BL1 was visualized using an HRP-conjugated α-His antibody (Thermo Fisher), the ECL system (GE Healthcare), and a Fuji LAS-1000 CCD camera.
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6

Western Blot Analysis of IDE Protein

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siRNA transfected cells were lysed in Laemmli buffer, denatured by boiling for 15 min, separated on a 10% SDS-PAGE gel and transferred onto polyvinylidene fluoride membranes (GE Healthcare). Membranes were blocked using non-fat dry milk in Tris-buffered saline with 0.1% Tween 20 overnight at 4°C and probed with an IDE-specific monoclonal antibody (mAb; clone 9B12, 0.5 µg/mL; Covance) and an actin B-specific (1∶5000, Sigma) mAb as loading control. Staining was visualized using HRP-conjugated secondary Abs (1∶25,000; Jackson ImmunoResearch), an ECL substrate (Immobilon™, Millipore) and a Fuji LAS-1000 CCD camera.
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7

Ciona Larval Protein Binding Assay

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Lysates of Ciona larvae at 15 hpf, or GST fusion proteins, which were expressed in the E. coli BL21 strain and purified using Glutathione Sepharose 4B (GE Healthcare), were incubated with B-UTKO1ox/B-UTKO1ph and avidin beads in immunoprecipitation (IP) buffer (50 mM Hepes, pH 7.5, 150 mM NaCl, 1 mM EDTA, 2.5 mM EGTA, 1 mM DTT, 10% glycerol, and protease inhibitor mixture). The beads were washed with IP buffer and PBS and eluted with 2 mM biotin in PBS, all at 4 °C. The eluted proteins were subjected to SDS/PAGE. Proteins were detected using an ECL Western blotting system (Millipore) and an LAS-1000 CCD camera (Fujifilm) or the ChemiDoc XRS+ System (Bio-Rad). For the competition assay, UTKO1 was added before incubating the samples with B-UTKO1ox.
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