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2 protocols using mouse anti smi31

1

Immunostaining of Peripheral Nerve Tissues

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Nerves were explanted and de-sheeted, then fixed in 4% paraformaldehyde (PFA, Sigma-Aldrich), included in OCT (Sakura, Leiden, The Netherlands) and cut in cross sections. For teased fibers, a slight digestion was performed incubating nerves fragments in collagenase IV for 45 min, before fixing in 4% PFA (Sigma-Aldrich). Cells were fixed in 4% PFA and processed for immunostaining. Primary antibodies used in these experiments were the following: rabbit anti PKCε 1:200 (Abcam), rabbit anti phospho S729 PKCε 1:200 (Abcam), mouse anti SMI31 1:500 (Biolegend, San Diego, CA, USA), mouse anti SMI32 1:500 (Biolegend), rabbit anti trkB 1:200 (Santa Cruz Biotechnology, Dallas, TX, USA) and fluoromyelin 1:150 (Thermo Fisher Scientific). After washing, slides and nerves were mounted using VectashieldTM (Vector Laboratories, Burlingame, CA, USA) and nuclei stained with 4,6-diamidino-2-phenylindole (DAPI). Confocal microscopy was carried out using a Zeiss LSM 900 Airyscan 2 (Zeiss, Gottingen, Germany) and images were processed with Image Pro-Plus 6.0 (Media Cybernetics, Bethesda, MA, USA). Controls for specificity included a lack of primary antibody.
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2

Immunohistochemistry Analysis of Retinal Tissue

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Animals were sacrificed following approved IACUC methods. For treatment (PLX5622 vs control diet) controls and determining effect of CCAO on the retina, the MONs or retinas were removed acutely and post-fixed for 24 hours in 4% paraformaldehyde (PFA). For IHC analysis of MONs that were exposed to OGD (with or without IPC), MONs were removed from the perfusion chamber at the conclusion of recordings and drop-fixed for 24 hours in 4% PFA. After fixation, MONs were rinsed in phosphate buffered saline (PBS), cryo-protected in 10%, 20%, and 30% sucrose, embedded in optimal cutting temperature (OCT) compound (Fisher), and sectioned at 12 μm on a cryostat. Slides were blocked in 10% donkey serum (Jackson ImmunoResearch) and 0.1% Triton X-100 (Sigma) for 30 min. Primary antibodies used: goat anti-Iba1 (Abcam, 1:500) or rabbit anti-Iba1 (Wako, 1:250), rabbit anti-TMEM119 (Abcam, 1:1000), sheep anti-Chx10/Vsx2 (Exalpha, 1:300), mouse anti-HuC/D (Invitrogen, 1:500), mouse anti-SMI31 (BioLegend, 1:500), and mouse anti-APC (Millipore, 1:200). Slides were incubated with appropriate secondary antibodies conjugated to Alexa-488 or Alexa-568 (Abcam; 1:500) and stained with 4’,6-diamidino-2-phenylindole (DAPI) (Sigma, 1:1000). Slides using Iba1, Tmem119, and/or APC antibodies were boiled for 3 minutes in citrate buffer for antigen retrieval prior to the block step.
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