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15 protocols using phorbol myristate acetate (pma)

1

Cell culture and treatment protocol

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Jurkat, Molt4, CCRF-CEM, SupT1 and U1 cells were maintained in RPMI1640 medium (GIBCO) with 10% fetal bovine serum (FBS, GIBCO), and antibiotics (GIBCO). For exogenous stimulation, the cells were treated with PMA (LC Laboratories), Ionomycin (CALBIOCHEM), or TNF-α (R&D systems). For inhibition of epigenetic factors, the cells were treated with the indicated concentrations of VPA (SIGMA), SAHA (Cayman), TSA (SIGMA), 3-deazaneplanocin A (DZNep, Cayman), or GSK126 (Chemie Tek). HEK293T, HEK293FT, and Hela/LTR-luciferase cells were maintained in DMEM with 10% FBS and antibiotics. Human peripheral blood mononuclear cells (PBMCs) were prepared from whole blood of healthy donors by density gradient centrifugation with Ficoll-Paque (GE healthcare). CD4+ T cells were purified by CD4+ T cell isolation kit (Miltenyi Biotec) and maintained in RPMI1640 with 10% of FBS. T cell activation was accomplished by treating the anti-CD3/CD28 antibodies (Miltenyi Biotec).
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2

Macrophage Polarization by Breast Cancer Cells

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Human monocyte cell line THP-1 were made to transform into undifferentiated and non-polarized M0 macrophages by 24 hr incubation with phorbol 12-myristate 13-acetate (PMA, LC Laboratories, 150 nM) followed by 24 hr incubation in R10 (14 (link)). For a positive control of M2 polarization, PMA-induced M0 THP-1 cells were incubated with IL-4 (20 ng/ml) and IL-13 (20 ng/ml) (Peprotech) for 48 hr. To study the effect of conditioned medium of breast cancer cell lines on differentiation of M0 macrophages, conditioned-R10 medium were collected from 48 hr grown cultures of MDA-MB-231, T47D, and MCF10A, while the M0 THP-1 cells were cultured in these conditioned media according to the combinations.
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3

Intracellular Cytokine Staining of Lung Cells

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Cells from lungs digested using the collagenase single-cell suspension protocol were resuspended in RPMI-1640 media containing 10% fetal bovine serum (FBS), penicillin (100U/mL)/streptomycin (100 μg/mL), 1mM sodium pyruvate, 0.2μM 2-mercaptoethanol, 2mM L-glutamine, 0.1mM non-essential amino acids, and 10mM HEPES buffer and cultured at 3×106 cells/well in 6-well cell culture-treated plates (Corning, Corning, NY), with cells from each mouse incubated separately in their own well. PMA (LC Laboratories, Woburn, MA) at a final concentration of 100 ng/mL and ionomycin (Sigma, St. Louis, MO) at a final concentration of 1500 ng/mL were used to stimulate the cells for 1 hour at 37°C with 5% CO2 before GolgiStop (BD Biosciences, San Jose, CA) was added; cells were cultured an additional 4 hours. Intracellular cytokine staining (ICS) was performed using the BD Cytofix/Cytoperm Fixation/Permeabilization kit (BD Biosciences, San Jose, CA) and antibodies to label the following cell surface markers and cytokines were used: CD45 (clone 30-F11, Biolegend, San Diego, CA), CD3ε (clone 145-2C11, Biolegend), CD4 (clone GK1.5, eBioscience, San Diego, CA), IL-17A (clone eBio17B7, eBioscience), and IFN-γ (clone XMG1.2, eBioscience). Stained cells were analyzed using a LSRII (BD Biosciences, San Jose, CA) and data were analyzed using FlowJo software (Tree Star Inc., Ashland, OR).
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4

Dental Pulp Stem Cell Isolation and Culture

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DPSCs were obtained from a patient with CS and healthy donors with approval by the Committee of Ethics, Nippon Dental University School of Life Dentistry, Tokyo. Informed consent was obtained from the patient. The dental pulp tissue was enzymatically digested as described in a previous study (Matsui et al., 2018). The cells were cultured in serum‐based minimum essential medium alpha (MEMα; Gibco/Thermo Fisher Scientific) supplemented with 20% fetal bovine serum (FBS; SAFC Biosciences; Gibco/Thermo Fisher Scientific), 100 µM l‐ascorbic acid phosphate magnesium salt n‐hydrate (Wako Pure Chemical Industries), 2 mM l‐glutamine (Gibco/Thermo Fisher Scientific), 100 U/ml penicillin, and 100 µg/ml streptomycin (Gibco/Thermo Fisher Scientific) at 37°C with 5% CO2 until Passage 1. Subsequently, the cells were cultured in STEMPRO® MSC SFM (Gibco/Thermo Fisher Scientific), a serum‐free medium for mesenchymal stem cell culture. The medium was changed every 2 days. At confluency, they were subcultured at a split ratio of 1:2 by gentle separation with TrypLE™ Express solution (Gibco/Thermo Fisher Scientific) at room temperature. To analyze the response to PMA, the cells were cultured in 60‐mm dishes (Corning), treated with 2.5 nM PMA (LC Laboratories), and harvested in centrifuge tubes. Cells cultured without PMA served as controls.
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5

Characterizing Upstream Regulators of Them1 Reorganization

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To explore the metabolic pathway leading to reorganization of intracellular Them1, various treatments were applied for 4 h to cultured iBAs as follows: Norepinephrine (1 μM; Sigma Aldrich; St. Louis, MO), a neurotransmitter, was used to mimic cold exposure. Forskolin (1 μM; Selleckchem, Houston, TX), a membrane permeable labdane diterpene produced from the Coleus plant, was used to activate adenylyl cyclase. This treatment, through the activation of cAMP, activates PKA. PMA (3 μM; LC Laboratories, Woburn, MA) was used to activate PKC. NE, adenylyl cyclase, and PKC were selected for activation as they represent three key control points in the pathway allowing the characterization of all upstream regulators. Pathway inhibitors were added 1 h prior to activation and were continued throughout the 4 h activation period as follows: PKI [14–22] myristoylated (0.5 μM; Invitrogen, Camarillo, CA), a synthetic peptide inhibitor of PKA, was added to inhibit PKA activation. Atglistatin (40 μM; Selleckchem, Houston, TX) was used to selectively inhibit the processing of triacylglycerol to fatty acids via the formation of diacylglycerol by ATGL. Ruboxistaurin, or LY333531, (2 μM; Selleckchem, Houston, TX), an isozyme-selective inhibitor of PKC that competitively and reversibly inhibits PKC-βI and PKC-βII, was added to inhibit PKCβ activity.
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6

Modulating PKC Activity in Cells

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The PKC peptide inhibitor sc-3088 with the sequence FARKGALRQKNV (final concentration: 1 μM; Santa Cruz Biotechnology, Dallas, TX, USA) and the PKC activator PMA (final concentration: 80 nM; LC Laboratories, Woburn, MA, USA), both dissolved in dimethyl sulfoxide (DMSO), were added to the cell culture medium. DMSO served as a negative control.
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7

Tumor Dissociation and Immune Cell Analysis

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Tumors were cut into small pieces, digested for 30 min at 37°C using Collagenase type IV (600U) (Sigma) and (400U) DNAse (Sigma). Next, tissue fragments were dissociated using a gentleMACS Dissociator, and filtered through a 100 μm cell strainer, washed with PBS containing 2 mM EDTA and 1% FCS, centrifuged and stained. Spleens were forced through the cell strainer (70 μm) and cells were centrifuged (500g) at 4ºC. When necessary, erythrocytes were lysed using a buffer containing 155 mM NH4Cl, 10 mM NaH2CO3, and 0.1 mM EDTA, pH 7.3. For staining, cells were blocked in 5% normal rat serum and stained with fluorescently labeled monoclonal antibodies: anti-CD11b (M1/70, 53-0112-82), anti-Ly6C (HK1.4, 17-5932-80), anti-CD200R (OX110, 12-5201-82), anti-MHC-II (M5/114.15.2, 25-5321-80) (eBioscicence, USA), anti-F4/80 (BM8, 123118) (BioLegend), anti-TNF-α (XT22, 554419), anti-IFN-γ (XMG1.2, 563376) (BD Pharmingen). For intracellular staining of TNF-α or IFN-γ, cells were first stimulated with PMA (LC Laboratories) / ionomycin (Thermo Fisher), and GolgiStop (BD Pharmingen) for at least 5 hrs and subsequently stained using Intracellular Fixation and Permeabilization Buffer Set (eBioscience) according to the manufacturer’s instructions.
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8

Intracellular Cytokine Staining of Lung Cells

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Cells from lungs digested using the collagenase single-cell suspension protocol were resuspended in RPMI-1640 media containing 10% fetal bovine serum (FBS), penicillin (100U/mL)/streptomycin (100 μg/mL), 1mM sodium pyruvate, 0.2μM 2-mercaptoethanol, 2mM L-glutamine, 0.1mM non-essential amino acids, and 10mM HEPES buffer and cultured at 3×106 cells/well in 6-well cell culture-treated plates (Corning, Corning, NY), with cells from each mouse incubated separately in their own well. PMA (LC Laboratories, Woburn, MA) at a final concentration of 100 ng/mL and ionomycin (Sigma, St. Louis, MO) at a final concentration of 1500 ng/mL were used to stimulate the cells for 1 hour at 37°C with 5% CO2 before GolgiStop (BD Biosciences, San Jose, CA) was added; cells were cultured an additional 4 hours. Intracellular cytokine staining (ICS) was performed using the BD Cytofix/Cytoperm Fixation/Permeabilization kit (BD Biosciences, San Jose, CA) and antibodies to label the following cell surface markers and cytokines were used: CD45 (clone 30-F11, Biolegend, San Diego, CA), CD3ε (clone 145-2C11, Biolegend), CD4 (clone GK1.5, eBioscience, San Diego, CA), IL-17A (clone eBio17B7, eBioscience), and IFN-γ (clone XMG1.2, eBioscience). Stained cells were analyzed using a LSRII (BD Biosciences, San Jose, CA) and data were analyzed using FlowJo software (Tree Star Inc., Ashland, OR).
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9

Synthesis and Characterization of Merle 23

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Merle 23 (755 MW) was synthesized as described [31 (link)]. Bryostatin 1 (905 MW) was from the Division of Cancer Therapeutics, National Cancer Institute. PMA (602 MW) was from LC Laboratories (Woburn, MA). Purity of compounds was >95%.
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10

Quantification of Feline IFNγ-Producing Mucosal Lymphocytes

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Capture and detection antibodies from the feline IFNγ Development Module (R&D Systems) were used with MultiScreen-IP 96-well plates (MAIPSWU10; MilliporeSigma) to quantify IFNγ-producing mucosal lymphocytes after stimulation with phorbol 12-myristate 13-acetate (PMA, 50 ng/mL; LC Laboratories, Woburn, MA) and ionomycin (300 ng/mL; LC Laboratories) or with FIPV antigen (60 µg/mL; IVD Technologies, Santa Ana, CA, USA) as previously described [16 (link)]. The protocol was modified with the use of 2.5 × 104 cells/well (PMA/ionomycin) or 2 × 105 cells/well (FIPV antigen) incubated for 40 h at 37 °C, 5% CO2. Plates were scanned with an ImmunoSpot S5 Analyzer, and analysis was performed by CTL.
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