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2 protocols using mouse anti 53bp1

1

Immunofluorescence Analysis of DNA Damage Response

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iMEFs were grown on coverslips overnight. Cells were irradiated (10 Gy IR) and allowed to recover for 90 min or 6 h. Upon fixation with 4% paraformaldehyde (Sigma-Aldrich) and permeabilization with 0.5% Triton X-100, cells were stained with anti-γH2AX (Millipore), rabbit anti-Rif1 serum (Di Virgilio et al., 2013 (link)), mouse anti-53BP1 (Millipore), mouse anti-Flag M2 (Sigma-Aldrich) or rabbit anti-ZMYND8 (Sigma-Aldrich) antibodies as primary antibodies, and with goat anti-rabbit Alexa546 and goat anti-mouse Alexa488 (Invitrogen) as secondary antibodies. Images were acquired using inverted LSM700 laser scanning confocal microscope (Zeiss).
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2

Investigating DNA Damage Response Mechanisms

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siRNAs were obtained from Dharmacon. HMCES: D-020333–01 5’-GCGAACAUCCUGUCACUUA, J-020333–19 5’-CGUAAUGGAGAAACGGUCA, and J020333–20 5’-ACCAACUGUCGUAGUGAUA. Smartpools were purchased from Dharmacon for REV3L, Rad18, USP1, SHPRH, BRCA1, and BRCA2. The following antibodies were used: rabbit anti-HMCES (Sigma, HPA044968); mouse anti-GAPDH (Millipore, MAB374); mouse anti-RPA32 (Abcam, ab2175); rabbit anti-Cyclin A (Santa Cruz, sc-751); mouse anti-PCNA (Santa Cruz, sc-56); mouse anti-Histone H3 (Abcam, ab10799); mouse anti-FLAG M2 (Sigma, F3165); 5-methylcytosine (Abcam, ab10805); 5-hydroxymethylcytosine (Abcam, ab106918); ssDNA antibody (Millipore, MAB3034); mouse anti-p21 (Cell Signaling, 2946); mouse anti-p53 (Santa Cruz, sc-126); mouse anti-53BP1 (Millipore, MAB3802).
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