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Fluorescent secondary antibody

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Fluorescent secondary antibodies are conjugated with fluorescent dyes. They are used to detect and visualize target proteins in various experimental techniques, such as immunofluorescence microscopy and Western blotting.

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266 protocols using fluorescent secondary antibody

1

Immunohistochemical Analysis of Rabbit Brain

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Rabbit kits were anesthetized and intracardially perfused with saline followed by 10% formalin at G29, PND1 and PND5. Brains were post-fixed for 24 h and cryoprotected in 30% sucrose. 30 μm sections were cut with a cryostat and mounted onto poly-L-lysine coated slides (Sigma Aldrich, MO, USA). The sections were blocked with 5% donkey serum, incubated with goat anti-IBA1 (1:250, Abcam, MA, USA), rat anti-CD11b (1:100, Genetex, CA, USA) and mouse anti-CD45 (1:100, Bio-Rad, CA, USA), or goat anti-IBA1 (1:250, Abcam, MA, USA) and rabbit anti-iNOS (1:50, Thermo Fisher Scientific, MA, USA), followed by fluorescent secondary antibodies (1:250, Thermo Fisher Scientific, MA, USA) for 2h. For TSPO and Lectin co-staining, sections were blocked with 5% donkey serum, and incubated with goat anti-TSPO (1:500, GeneTex, CA, USA) overnight at 4°C. The sections were washed, incubated with DyLight 594 lectin (1:250, Vector Laboratory) and fluorescent secondary antibody (1:250, Thermo Fisher Scientific, MA, USA) for 2 h. Sections were washed and incubated in DAPI (1:1000) for 15 min. Immunolabelled sections were cover-slipped with Dako fluorescence mounting medium (VWR, PA, USA). All the images were captured on Zeiss LSM710 confocal microscope, keeping similar settings during image acquisition for different groups.
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2

Immunohistochemical Staining and Imaging Protocol

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Tissue specimens were processed and stained as previously described1 (link). Slides were stained with primary antibodies (Phospho-Paxillin (Tyr118), 1:100, Cell Signaling; ACP6, 1:50, Abcam; p53 (Pantropic), 1:100, Millipore Sigma; Ki-67, 1:200, Thermo Fisher Scientific) in 1.25% normal horse serum/PBS or 20% goat serum/TBST overnight at 4 °C. For IHC, slides were visualized using VECTASTAIN Elite ABC HRP kit and DAB Substrate Kit (Vector Laboratories) and counterstained with hematoxylin (Thermo Fisher Scientific). For IF, slides were probed with fluorescent secondary antibodies (1:200, Thermo Fisher Scientific) and Hoechst 33258 (1:200, Thermo Fisher Scientific). Images were acquired with a Nikon Eclipse Ti2 microscope and images processed and quantified with Fiji-ImageJ or NIS-Elements HC.
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3

Immunofluorescence Analysis of PAX8 and β-Catenin

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Cells were fixed in 4% paraformaldehyde, permeabilized with 0.5% TritonX-100, and blocked with 10% goat serum. Primary antibodies (PAX8, 1:200, Cell Signaling Technologies; β-catenin, 1:200, BD Biosciences) were incubated overnight in 10% goat serum. Samples were probed with fluorescent secondary antibodies (Thermo Scientific) and Hoechst (Invitrogen) for one hour before washing and mounting with ProLong Gold. Images were collected on a Zeiss LSM 510 Meta Confocal microscope and images processed with ImageJ.
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4

Immunostaining of Lymphoid Tissues

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Mediastinal lymph nodes or spleen segments were fixed in PLP fixative (periodate-lysine-paraformaldehyde) overnight as reported previously45 , cryoprotected in 15% sucrose, embedded in OCT medium (Electron Microscopy Sciences) and frozen in dry-ice cooled isopentane. Sixteen-micron sections were cut on a Leica cryostat (Leica Microsystems), blocked with 5% goat or donkey serum then stained with a combination of the following: B220 (clone RA3-6B2), GL-7 (clone GL-7), CD38 (clone RP-T8) and detected using fluorescent secondary antibodies (ThermoFisher Scientific). Sections were incubated with secondary antibodies only as controls, and images were acquired using identical PMT (photomultiplier tube) and laser settings using a Leica SP5 confocal microscope.
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5

Immunofluorescent Staining of Skin Sections

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Skin sections underwent deparaffinization and were permeabilized with 0.5% Triton X-100 in PBS for 5 min. They were next incubated with blocking buffer (5% normal donkey serum, 0.2% Triton-X in PBS) prior to primary antibody incubation at 4 °C overnight with the following antibodies diluted in blocking buffer: anti-TGF-β(1:400, MAB240-SP, R&D system, MN, US), anti-Collagen I (1:200, ab24821, Abcam, Cambridge, UK), and anti-Collagen III (1:400, ab6310, Abcam). After three 30-min washes with PBS + 0.05% Triton-X, samples were stained for 1 h at room temperature with fluorescent secondary antibodies (ThermoFisher Scientific, MA, USA) followed by two washes with PBS. The slides were mounted with Antifade Mounting Medium with DAPI (h-1200, Vector laboratories, CA, USA) and viewed under a spinning-disc confocal microscope (Carl Zeiss).
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6

ΔOTC Measurement in Parkin-expressing Cells

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For ΔOTC measurements in cells with or without YFP-Parkin expression, 1,000 ΔOTC-inducible cells were plated into 1,536-well dishes in 1 µg/ml DOX for 48 h. Cells were then permeabilized and blocked with 0.1% Triton X-100 and 3% goat serum in PBS for 40 min. Cells were incubated with antibodies diluted in 0.1% Triton X-100 and 3% goat blocking serum in PBS overnight at 4°C and then were rinsed with 0.1% Triton X-100 in PBS and incubated with the appropriate fluorescent secondary antibodies (Thermo Fisher Scientific) for 1 h at room temperature. Cells were washed three times for 5 min each with 0.1% Triton X-100 in PBS and imaged on an Acumen High Content Imager (TTP Labtech).
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7

SDS-PAGE and Western Blot Analysis

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For SDS-PAGE, samples were denatured with 100 mM dithiothreitol (DTT) and 1× Laemmli buffer. Proteins were fractionated on either 4 to 12% NuPAGE Novex Bis-Tris gels or 7% NuPAGE Tris-acetate gels (Thermo Scientific). Proteins were transferred onto nitrocellulose membranes (Thermo Scientific), blocked (5% skim milk powder; Sigma), and probed with anti-FLAG (Sigma), anti-CsrS (6 (link), 12 (link)), or anti-His (Abcam) antibodies. Proteins were visualized and analyzed using an Odyssey infrared imaging system (LI-COR, Lincoln, NE) and Image Studio software monitoring incubation with fluorescent secondary antibodies (Thermo Scientific).
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8

Immunohistochemical Analysis of Cardiac Tissue

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The heart sections from different groups were hydrated and the antigens were retrieved. Next, the sections were permeabilized with 0.1% Triton X100 for 30 minutes and blocked with 5% bovine serum albumin for 30 minutes. Subsequently, heart sections were incubated overnight at 4°C with the following primary antibodies: anti-human mitochondria (1 : 100; ab92824, Abcam), anti-CD31 (1 : 100; 77699, CST), and anti-α-smooth muscle actin (α-SMA) (1 : 100; ab5694, Abcam). After washing with TBST three times, the slides were incubated with fluorescent secondary antibodies (thermo fisher) for 30 minutes at room temperature. Finally, human mitochondria density, capillary or arteriole density was evaluated using the average number of human mitochondria positive cells, CD31- or α-SMA-positive blood vessels per field (magnification ×100).
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9

Vasicinone's Neuroprotective Effects on Paraquat-Induced Oxidative Stress

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Vasicinone (purity > 98%) was purchased from Cayman Chemical (CAS-486-64-6, Ann Arbor, MI, USA). Paraquat, a Mitochondria Staining Kit (JC-1 stain) and 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyltetrazolium bromide (MTT) were purchased from Sigma-Aldrich (St. Louis, MO, USA). The MitoSOXTM Red kit (M36008) was purchased from Thermo Fisher Scientific (Waltham, MA, USA). Dulbecco’s modified Eagle medium (DMEM:F12) and fetal bovine serum (FBS) were purchased from Gibco (Grand Island, NY, USA). Primary antibodies against SOD-1, SOD-2, GST, GPx, TOM-20, VDAC-1, Parkin, PINK-1 and GAPDH were purchased from Santa Cruz Technology (Dallas, TX, USA), antibodies against DJ-1, α-synuclein, p-ULK, ATG7, ATG12 and LC3B were purchased from Cell Signaling Technology (Danvers, MA, USA) and an antibody against Nrf-2 was purchased from Abcam (Cambridge, MA, USA). All fluorescent secondary antibodies were purchased from Thermo Fisher Scientific in the USA.
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10

Immunoblotting Protein Detection Protocol

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Samples were resolved by SDS-PAGE (10–15% gels), transferred to Immobilon-P membranes (Millipore Inc.) and immunoblotted as indicated. Primary antibodies were used to detect Bcl-xL (54H6, 1:1,000 dilution, Cell Signaling; 2H12, 1:500 dilution, Invitrogen), COX IV (3E11, 1:20,000 dilution, Cell Signaling), Drp1 (D6C7, 1:1,000 dilution, Cell Signaling), Flag (66008-3-Ig, 1:1,000 dilution, Proteintech), GAPDH (sc-365062, 1:1,000 dilution, Santa Cruz biotechnology), GFP (sc-8334, 1:1,000 dilution, Santa Cruz biotechnology), HA (51064-2-AP, 1:1,000 dilution, Proteintech), Mff (17090-1-AP, 1:2,000 dilution, Proteintech), PARP (46D11; 1:1,000 dilution, Cell Signaling), RFP (3F5, 1:1,000 dilution, ChromoTek), SENP3 (D20A10, 1:10,000 dilution, Cell Signaling), and β-actin (A2228, 1:20,000 dilution, Sigma). Immune complexes were detected either using HRP-conjugated secondary antibodies (Sigma) or an HRP-conjugated VeriBlot secondary antibody (ab131366, Abcam; for immunoblotting involving IP samples) followed by enhanced chemiluminescence (GE Healthcare Amersham), or using fluorescent secondary antibodies (Thermo Fisher Scientific) by a LI-COR imaging system. Each immunoblot presented is representative of at least three independent experiments carried out using different cell populations.
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