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83 protocols using cli 095

1

Lipid-Mediated TLR4 Modulation

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Cell media were replaced with DMEM containing 0.5% FBS and the TLR4 inhibitor CLI-095 (1 μg/mL; InvivoGen, San Diego, CA, USA) for 6 h. LPS (1000 ng/mL) was added with or without PA or LA (25 μM) and allowed to incubate for 24 h.
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2

TLR4/2 Signaling Inhibitors Protocol

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The TLR4 signaling inhibitor CLI-095 (#tlrl-cli95, TAK-242), and the TLR2+4 inhibitor OxPAPC (#tlrl-oxpap1) were purchased from Invivogen (San Diego, USA). ERK 1/2 inhibitor FR180204 (#SML0320), rotenone, dimethylsulfoxid (DMSO), ionomycin and PMA were obtained from Sigma-Aldrich.
rotenone was freshly prepared and dissolved in DMSO prior to the experiments. DMSO concentration in cell culture media did not exceed 0.5%. Argon was purchased in fixed gas mixtures (argon 25, 50 or 75 Vol%, oxygen 21%, respective rest nitrogen) from Air Liquide (Kornwestheim, Germany).
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3

Cytokine Response to Vaccine Components

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JAWS II cells were seeded in 12 well tissue-culture plates, in triplicate, at a density of 106 cells/mL and pretreated with 2 μg/mL CLI-095 (InvivoGen, San Diego, CA) for 6 hours. The cells were then left untreated or treated with LPS, a vaccine component or the vaccine for another 24 hours. Supernatants were collected and stored at −20 °C for future analysis.
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4

Murine Pancreatic Islet Endothelial Cell Culture

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The murine MS1 (Mile Sven 1) pancreatic islet endothelial cell line, obtained from American Type Culture Collection (ATCC®, CRL-2279TM), is a commonly used model of microvascular endothelium. MS1 cells were cultured in high glucose (4.5 g/l) Dulbecco’s modified Eagle’s medium (DMEM), supplemented with 5% decomplemented (heat inactivated) fetal bovine serum (FBS), 120 U/mL streptomycin/penicillin and 4 mM L-Glutamine, in 5% CO2 at 37 °C. MOVAS (ATCC®, CRL-2797TM) is an established VSMC line from C57BL/6 mice. Cells were grown in DMEM supplemented with 10% FBS, 2 mM L-Glutamine and 0.2 mg/ml G-418 (all reagents obtained from Lonza). For experiments, cells at 80% confluence were growth-arrested by serum starvation for 24 h. Endotoxin-free CsA (Calbiochem, Merck Chemicals) and tacrolimus (USBiological) stock solutions (10 mg/ml) were dissolved in ethanol. CLI-095 (InvivoGen) was used according to manufacturer’s time and dose recommendations. The NF-κB inhibitor parthenolide, the TRIF inhibitor resveratrol and the antioxidants 4′-hydroxy-3′methoxyacetophenone (apocynin) and diphenyleneiodonium chloride (DPI) were from Sigma-Aldrich. These reagents were used at concentration derived from prior dose-response studies in our laboratory or from bibliographic data.
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5

Inhibitors of Inflammatory Pathways

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The FJU‐Cs compound used in this study was synthesized at the Department of Chemistry at Fu‐Jen Catholic University, Taiwan. LPS (Escherichia coli 0111:B4; Catalogue Number: L4391) was purchased from Sigma‐Aldrich. BAY11‐7082 (NF‐κB inhibitor), PD98059 (ERK1/2 inhibitor), SB203580 (p38 MAPK inhibitor) and SP600125 (JNK inhibitor) were purchased from Enzo Life Sciences. Rapamycin (mTOR inhibitor) and Wortmannin (Phosphatidylinositol 3‐kinase Inhibitor) was purchased from Abcam Biotechnology. CLI‐095 (TLR4 signaling inhibitor) was purchased from InvivoGen.
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6

Modulation of MoDC Activation by ROS, TLR4, and Caspase-1

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The reactive oxygen species (ROS) scavenger MCI-186 (Biomol Research Laboratories) was dissolved in DMSO and diluted in a range from 1mM to 50μM. The MoDCs were pre-treated with MCI-186 for 1hr. The TLR4 inhibitor CLI-095 (Invivogen, San Diego, CA) was used according to the manufacturer’s protocol. CLI-095 is a selective TLR4 inhibitor shown not to inhibit TLR2, 3, and 9 signaling [32 (link)]. Lipid IVa (Pepta Nova, Sandhausen, Germany), a lipid A antagonist which binds MD-2, was dissolved in DMSO and used at a final concentration of 1μg/mL. The caspase-1 inhibitor peptide (ICE Inhibitor V, Z-Asp-[(2,6-dichlorobenzoyl)oxy]methane, Z-D-CH2-DCB (Calbiochem,Billerica, MA) was used at 100μM final concentration. Control DC samples contained equimolar amounts of BSA, EtOH, or DMSO as used in experimental groups.
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7

Flow Cytometry Immunophenotyping Protocol

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For flow cytometry, the following fluorochrome-conjugated monoclonal antibodies were used. BD Biosciences: HLA-DR-APC (Clone: G46-6), CD86-FITC (Clone: FUN-1), CD80-PE (Clone: L307.4), CD54-APC (Clone: HA58), CD25-FITC (Clone: M-A251), CD127-BV421 (clone HIL-7R-M21), IFN-γ-FITC (Clone: 4S.B3), IL-4-PE (Clone: MP4-25D2); eBioscience: FoxP3-APC (Clone: 236A/E7), IL-17A-PE (Clone: Ebio64cap17); Beckman Coulter: CD40-PE (Clone: MAB89); Biolegend: CD4-PerCP (Clone: SK3). Cell viability was detected using the fixable viability dye eFluor 506 (eBioscience).
Antigen affinity-purified polyclonal anti-human TLR4 goat IgG was purchased from R&D systems. Cytokines (recombinant human granulocyte-macrophage colony-stimulating factor and IL-4), MicroBeads (CD14 and CD4) and cell purification units were obtained from Miltenyi Biotec. Protein-A agarose beads were from Cell Signalling Technology, and E. coli 055:B5 LPS and Polymyxin B-conjugated agarose beads were from Sigma-Aldrich. TLR4 signaling inhibitor CLI-095 and CpG ODN 2006 were procured from InvivoGen.
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8

TLR Ligand and Inhibitor Treatment

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The following TLR ligands and inhibitors were obtained from InvivoGen (San Diego, CA, USA): CpG (2 μM), Pam3C (300 ng/mL), PolyI:C (10 μg/mL), CLI-095 (1 μM), and BX795 (100 nM). LPS (500 ng/mL) was obtained from Sigma. HMGB1 (1 μg/mL) was obtained from GenScript (Piscataway, NJ, USA). Concentrations used in the experiments presented are specified in parentheses. Cells were treated for 7 days before growth was assessed or 1 day before harvesting for mRNA or protein. All signaling modulation experiments were performed at least three times.
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9

Palmitate and LPS Influence on Cell Signaling

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After 12 h of pre-incubation with or without palmitate (50 µM), cells were treated with Pg-LPS (100 ng/ml) for another 12 h. Cells were also pretreated by TLR4 signaling inhibitor Cli-095 (InvivoGen, San Diego, CA, USA) for 6 h and stimulated by palmiatate (50 µM) for indicated time. Primary antibodies against Polyclonal anti-poly (ADP-ribose) polymerase (PARP), P-p65, P-p38, P-JNK and P-ERK were purchased from Cell Signaling Technology, Inc. (Danvers, MA, USA). Monoclonal anti-β-actin was purchased from Sigma-Aldrich Co. LLC. (St. Louis, MO, USA) Western blotting was performed as previously described [18] . Cell pellets (1.5×105 cells) were resuspended in ice-cold lysis buffer. Proteins were separated by SDS-PAGE and electro-blotted onto a nitrocellulose membrane. After blocking of the membrane with 3% milk for 30 min, membranes were incubated with primary antibodies (1∶1000) and anti-rabbit secondary antibody. β-actin (1∶10,000) was used as internal control. The results were visualized by Amersham ECL western blotting detection system (GE Healthcare, Japan).
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10

Inhibition of Immune Pathways

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Syk inhibitor (ER 27319 maleate), TLR2 inhibitor (human TLR2 mAb, clone 383936), isotype control for TLR2 mAb (mouse IgG2B, clone 20116), pan-caspase inhibitor (Z-VAD-FMK), caspase-8 inhibitor (Z-IETD-FMK), NADPH-oxidase inhibitor (apocynin) and phagocytosis inhibitor (cytochalasin D) were purchased from R&D Systems. TLR4 inhibitor (CLI-095) was from Invivogen, IRAK-1/4 inhibitor from EMD Millipore, glycine from Sigma-Aldrich. All inhibitors were used at concentrations indicated in the figure legends. All reagents were reconstituted in sterile dimethyl sulfoxide except for the antibodies that were dissolved in PBS and glycine that was dissolved in distilled water.
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