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65 protocols using smifh2

1

Pharmacological Modulation of Actin Dynamics

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For pharmacological experiments, SMI-FH2 (Sigma-Aldrich) was dissolved in DMSO, diluted in media, and added to cultures for 10 min at a final concentration of 10 mM SMI-FH2 and 0.01% DMSO. CK-666 (EMD Millipore) was dissolved in DMSO, diluted in media, and added to cultures for 24 hr at a final concentration of 20 mM CK-666 and 0.01% DMSO. Equivalent volumes of media and DMSO were added to control cultures.
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2

Visualizing Lipid Dynamics in Pollen Tubes

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After pollen germination for 3 h, LDs in pollen tubes were stained with neutral lipid stain Nile Red (0.3 µg mL−1) for 15 min before microscopic observation. For pharmacological treatments, pollen germinated for 3 h was submerged in liquid pollen germination medium supplemented with 50 mM 2,3-butanedione monoxime (BDM) (Sigma, Livonia, MI, USA), 10 µM oryzalin (Merck, Kenilworth, NJ, USA), 50 µM brefeldin A (Sigma, Livonia, MI, USA), 40 µM cytochalasin D (Sigma, Livonia, MI, USA), 100 µM SMIFH2 (Sigma, Livonia, MI, USA), and 3 nM latrunculin B (Calbiochem, San Diego, CA, USA) for 15 min. The drugs and the Nile Red stain were washed away before confocal observation.
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3

Modulation of Macrophage Cytoskeleton

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Primary human macrophages were pretreated with 10 µM of either the SFK inhibitor PP2 (Sigma-Aldrich) or the myosin II inhibitor blebbistatin (Sigma-Aldrich), with 100 µM of the Syk kinase inhibitor piceatannol (Sigma-Aldrich), or with 0.5 µM jasplakinolide (Sigma-Aldrich) for 30 min, or with 1 µM of either latrunculin A (EMD Millipore) or the PI3K inhibitor wortmannin (Sigma-Aldrich), or with 10 µM of the formin inhibitor SMIFH2 (Sigma-Aldrich) for 10 min, in PBS at 37°C. As a control, cells were incubated with DMSO. After incubation, cells were resuspended in culture medium and plated onto coverslips under nonactivating or activating conditions for 10 min, as indicated, before being fixed and stained for imaging.
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4

Formin and Myosin II Inhibition Protocol

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For formin drug inhibition studies, cells were incubated with 20 or 40 μM SMIFH2 (4401, TOCRIS, UK) in serum containing DMEM for 1–2 h at 5% CO2, 37 °C. In in vitro experiments, SMIFH2 (340316-62-3, Sigma-Aldrich) was used at a concentration of 100 μM (see below). For myosin II inhibition studies, 30 μM or 50 μM Rho-kinase (ROCK) inhibitor Y-27632 (Y0503, Sigma-Aldrich), or 20 μM S-nitro-blebbistatin (13013-10, Cayman Chemicals) was added for 10–20 min before the experiments or directly during observation. All inhibitors remained in the medium during the entire observation period.
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5

Pharmacological Modulation of Actomyosin

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Pharmacological actomyosin-specific reagents, such as the Arp2/3 complex inhibitor CK-666 (Merck Bio-sciences, UK), the formin FH2 domain inhibitor SMIFH2 (Sigma-Aldrich, UK), and the photo-resistant myosin inhibitor Blebbistatin (Milipore) were added to the culture medium at concentrations of 100 μM, 40 μM and 100 μM, respectively. Cells were left to incubate between 30 s and 30 min, as indicated in the corresponding experiment description. Notably, inhibitors were also present at the same concentration in the imaging medium. We could not detect any significant differences in T-cells in the presence of DMSO for the different experimental conditions.
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6

Pharmacological Inhibition of Cell Mechanics

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Pharmacological inhibitors were added to cell media 10 minutes before time-lapse microscopy experiments. The concentrations used for the inhibitors are: 100 nM Latrunculin A (Tocris Bioscience, actin polymerization inhibitor), 70 μM NSC 23766 (Tocris Bioscience, Rac 1 inhibitor), 50 μM CK 666 (Sigma, Arp 2/3 inhibitor), 20 μM ML141 (Tocris, Cdc 42 GTPase inhibitor), 20 μM SMIFH2 (Sigma, formin inhibitor), 30 μM fascin-G2 (Xcess Biosciences Inc., fascin inhibitor), 50 μM Y-27632 (Sigma, ROCK inhibitor) 25 μM ML-7 (Tocris, myosin light chain kinase inhibitor), 2 μg/ml CD29 Monoclonal Antibody TS2/16 (Life Technologies, β1-integrin activator), and 5 μg/ml monoclonal β1-integrin-blocking antibody (Abcam, P5D2). For HT-1080 cell detachment studies, cells were seeded on fast and slow-relaxing gels and allowed to spread overnight. 10 μg/ml monoclonal β1-integrin-blocking antibody was added to media and live-cell imaging started. Images were acquired every 2 minutes for 12 hours.
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7

Efficient Inhibition and Knockdown Strategies

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The small-molecule inhibitors were SMIFH2 (Sigma s4826, 60 microM), CK-869 (Sigma C9124, 80 microM) LatrunculinA (Sigma L5163, 0.5 microM), G2 (Xcessbio M60269 for cell treatments, Valuetech custom synthesis for mouse injections). All plasmids were sequence-verified before use and transfected as endotoxin-free maxi preps. siRNAs were selected among FlexiTube GeneSolution 4 siRNA sets (Qiagen) and reordered after validation as dTdT-overhanging 19 nt RNA duplexes (Thermo). shRNAs were selected among pre-validated Mission pLKO1-shRNA (Sigma) and the corresponding U6-shRNA-cPPT cassettes were subcloned into PB-empty vector25 (link). Sequences of siRNAs are provided in Table 1.

siRNA and shRNA sequences.

Target genesiRNA or shRNA Sequence
hFSCN1 AUGGCAAGUUUGUGACCUCC
hFSCN1 BCAGCGUCACCCGUAAGCGC
hCAPZB AGAAGUACGCUGAACGAGAUck
hCAPZB BGGAGUGAUCCUCAUAAAGA
AllStars negative control (Qiagen)Not available—proprietary information
Scramble control shRNAUUCUCCGAACGUGUCACGU
mFSCN1 A

CCGGGCATCCGCTAGTAGCTTGAAACTCGAGTTTCAAGC

TACTAGCGGATGCTTTTTG

mFSCN1 B

CCGGCCTCCTGTTATCCTTACTCATCTCGAGATGAGTAAG

GATAACAGGAGGTTTTTG

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8

Epithelial-Mesenchymal Transition and Chirality Induction

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To induce EMT in epithelial cells, NBT-II cells were treated in culture medium supplemented with 100 ng ml−1 EGF. For EMT induction in keratinocytes, HaCaT cells were treated in culture medium supplemented with 20 ng ml−1 TGF-β1 (Sigma) and 100 ng ml−1 EGF for 1 day and refreshed with 10 ng ml−1 TGF-β1 and 100 ng ml−1 EGF daily for 3 more days before overnight imaging, or for 4 more days before lysate preparation. To induce chirality in keratinocytes, HaCaT cells were treated with 20–200 nM of latrunculin A (Sigma). For drug inhibition studies, 5–20 nM cytochalasin D (Sigma) or 15 µM SMIFH2 (Sigma) were added to HaCaT cells within 2 h of seeding on micropatterned dishes. For transcriptional inhibition study, cells were treated with 2 µg ml−1 of actinomycin D (Sigma) or pre-treated with 2 µg ml−1 of actinomycin D for 2 h prior to the addition of latrunculin A. All inhibitors remained in the medium during the entire period of observation.
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9

Actin Cytoskeleton Modulation in Viral Infection

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Inhibitor stocks were prepared in DMSO at concentrations of 4 mM for CytoD (Sigma-Aldrich), 10 mM for CK-666 (Sigma-Aldrich), and 3 mM for SMIFH2 (Sigma-Aldrich). Different dilutions of the inhibitors were assessed (1 to 4 μM for CytoD, 100 to 500 μM for CK-666, and 100 to 500 μM for SMIFH2) to determine the appropriate working concentrations that have maximal effects on the actin cytoskeleton (see Fig. S6in the supplemental material) without causing a loss of transepithelial resistance below 500 Ω·cm2. At 36 h after MeV-GFP infection, HAE cells were treated apically and basolaterally with final concentrations of 4, 500, and 100 μM for CytoD, CK-666, and SMIFH2, respectively, for 24 h. After treatment, the HAE cells were imaged using an inverted UV fluorescence microscope. The data are presented as means ± the standard deviations of the log-transformed value of individual data points. Statistical significance as adjusted P values between groups was determined by using one-way analysis of variance (ANOVA) with corrections for multiple comparisons.
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10

Microscopic Actin Cytoskeleton Analysis

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Mouse monoclonal antibodies to Siglec-1 (Hsn 7D2) and rabbit polyclonal antibodies against cofilin and phospho-cofilin (phospho S3) were obtained from Abcam. Rabbit antibodies against pERM (48G2) and pMLC were purchased from Cell Signaling. Anti-Mouse IgG F(ab) ATTO488 was from Hypermol and Anti-Rabbit IgGF(ab) Cy3 was from Jackson Immunoresearch. Donkey anti-mouse AlexaFluor Plus 488 secondary antibody was from Thermo Fisher. The SIR-Actin Spirochrome Kit (CY-SC001), the Rho Inhibitor I ADP ribosylation of Rho Asn-41 (CT04) and Rho Activator II (CN03) were obtained from Cytoskeleton. The phosphor-ezrin inhibitor NSC668394 was from Calbiochem. The pan-formin inhibitor SMIFH2, the Arp2/3 inhibitor CK-666 and the actin polymerization inhibitor CytoD were purchased from SIGMA. The ROCK inhibitor Y-27632 was obtained from Merk Millipore.
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