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217 protocols using spermidine

1

Spermidine Reverses Arterial Aging in Mice

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C57BL/6 mice were randomly divided into 3 groups: the sham group mice infused with normal saline receiving regular drinking water, experimental AAA vehicle group mice receiving regular drinking water, and spermidine group mice receiving spermidine (S0266, Sigma‐Aldrich, St. Louis, MO) via drinking water at a concentration of 3 mmol/L. spermidine at this dose has been proven to effective in cardioprotection and reversing arterial aging.14, 15 SPD treatment started on the day for, or 3 days after, PPE infusion, and continued until euthanasia. Drinking water was replaced every other day by diluting 1 mol/L stock (spermidine/HCl pH 7.4) solution with drinking water as previously described.14, 15
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2

Autophagy and eNOS Signaling in Diabetic Endothelial Cells

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To gain further insight into the links between altered autophagy and eNOS signaling in diabetes, we used HAECs exposed to physiological (5 mM) and elevated (30 mM) glucose concentrations for 24 hours. HAECs were purchased from Lonza, Inc and maintained with the EGM-2 bullet kit containing 5 mM glucose. Expression of autophagy proteins and insulin-mediated activation of eNOS was assessed by immunofluorescence, as described above. To block autophagy and to probe the level of autophagic flux, HAECs were incubated for 60 min with 10 nM bafilomycin A1.22 (link), 23 (link) To determine whether activating autophagy would reverse glucose-induced endothelial dysfunction, HAECs were incubated with 30 mM glucose in EGM-2 media for 24 hours and then treated with 3 mM spermidine (Sigma Aldrich) for six hours followed by 18 additional hours of 30 mM glucose exposure before fixing cells for protein expression or examining insulin-induced eNOS activation as described above. In addition, insulin-induced eNOS activation was assessed following treatment with autophagy inhibitors bafilomycin A1 (10 nM) or 3-methyladenine (3-MA; 10 mM; Sigma Aldrich) during insulin stimulation for one hour following spermidine treatment. spermidine activates autophagy via a general increase in the expression of autophagy-related genes, which was confirmed by RT-qPCR, as described below.
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3

In Vitro Transcription and Translation Assay

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Transcription reactions were conducted with ∼5-20 ng/μl purified PCR product, in 40 mM HEPES pH 7.4, 6 mM MgCl2, 20 mM spermidine (Sigma), 10 mM DTT, 0.5 mM ATP, 0.5 mM UTP, 0.5 mM CTP, 0.1 mM GTP (Roche), 0.5 mM CAP (NEB), 0.4-0.8 U/μL rRNasin (Promega), and 0.4 U/μL SP6 polymerase (NEB) at 37°C for 60 min (Sharma et al., 2010 (link)). In vitro translation reactions in a homemade rabbit reticulocyte (RRL) system containing 1/20 volume of transcription reaction, 0.5 μCi/μL 35S-methionine (Perkin Elmer EasyTag), nuclease-treated crude rabbit reticulocyte (Green Hectares), 20 mM HEPES, 10 mM KOH, 40 μg/mL creatine kinase (Roche), 20 μg/mL pig liver tRNA, 12 mM creatine phosphate (Roche), 1 mM ATP (Roche), 1 mM GTP (Roche), 50 mM KOAc, 2 mM MgCl2, 1 mM glutathione, 0.3 mM spermidine, and 40 μM of each amino acid except for methionine (Sigma), were at 32°C for 25 min unless otherwise indicated (Shao et al., 2013 (link), Sharma et al., 2010 (link)).
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4

Paraquat and Spermidine Effects on Mice

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Mice in the control, PQ, and the combination groups (0.3 mM + PQ and 3 mM Spd + PQ) were subjected to a total of 6 injections of saline solution or PQ solution given at 10 mg/kg which was administered intraperitoneally every 3 days for 3 weeks (Chen L. et al., 2012 (link)). Animals in the Spermidine group and the combination groups received previously reported doses of 0.3 and 3 mM Spd in drinking water (LaRocca et al., 2013 (link); Eisenberg et al., 2016 (link)) every day for 21 days. Spermidine (Sigma-Aldrich, St Louis, MO, United States) was prepared fresh in tap water every 3 days from a 1 M aqueous stock solution (Spermidine/HCl pH 7.4) stored at −20°C, while PQ (Sigma-Aldrich, St Louis, MO, United States) was prepared fresh in saline solution before injection.
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5

Modulating Pancreas Development in Zebrafish

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Zebrafish embryos were collected and cultured in standard conditions at 28.5 °C in egg water supplemented with (4 mM) 1-phenyl 2-thiourea (PTU). Pharmacological inhibitor, 1% w/v difluoromethylornithine (DFMO) (generous gift from Dr. P. Woster) or 20 mM N1-guanyl-1,7-diaminoheptane (GC7) (ProSpec), was then added to the egg water at 24 hpf, refreshed at 48 hpf, and washed out at 72 hpf. The optimal concentration was determined by dose curve, using GFP expression in Tg(ptf1a:gfp) embryos as the phenotypic read out, examining embryos for alterations in proper pancreas development without gross alteration in overall morphology.
For experiments involving spermidine supplementation, embryos were cultured in egg water with 1 mM spermidine (Sigma-Aldrich) either alone or in combination with 1% w/v DFMO. The optimal concentration of 1 mM spermidine was determined by dose curve examining embryos for alterations in overall morphology and viability.
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6

Nuclei Isolation and Photocrosslinking Protocol

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Combine 250 μl of ice-cold nucleus lysis buffer (10 mM of Tris-HCl, pH 7.5, 10 mM of NaCl, 3 mM of MgCl2, 0.5% NP-40, 0.15 mM of spermine (Sigma), 0.5 mM of spermidine (Sigma)) with 50 μl of protease inhibitors (Sigma). Add to 5 million cells without fixing. Incubate cell suspension on ice for 5 min. Centrifuge at 500g for 5 min at 4 °C. Discard the supernatant. Wash pelleted nuclei once with 500 μl of nucleus resuspension buffer (10 mM of Tris-HCl pH 7.4, 15 mM of NaCl, 60 mM of KCl, 0.15 mM of spermine (Sigma), 0.5 mM of spermidine (Sigma)). Centrifuge at 500g for 5 min at 4 °C and discard the supernatant. Resuspend the cell pellet in 500 μl of 50 μM dendrimer in methanol. Incubate at 4 °C on a rocker with rotation for 10 min. Photocrosslink the nuclei by irradiating under 365 nm of UV for 15 min at 4 °C. The nuclei should be allowed to rest on ice for 5 min before another 15 min of 365 nm of UV irradiation at 4 °C. Centrifuge for 5 min at 2,500g at 4 °C. Discard the supernatant. Wash pelleted nuclei twice with 500 μl of nucleus resuspension buffer. Centrifuge and discard the supernatant. Resuspend the pellet in proteinase K digestion buffer (420 μl of nucleus resuspension buffer, 50 μl of 10% SDS, 30 μl of 20 mg ml−1 proteinase K). Incubate the resuspension at 65 °C overnight on a thermomixer at 800 r.p.m.
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7

Spermidine Supplementation in Aging Rats

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Middle-aged (18 months) male Sprague-Dawley rats were obtained from the Experimental Animal Center of Henan Province (Zhengzhou, China) and kept under a 12 h light/dark cycle, controlled temperature (23°C), and constant relative humidity of 50%-60%. Food and drinking water were freely accessible. The rats were randomly divided into two groups: the control group (N = 40) and the spermidine group (N = 40). Rats in the spermidine group were treated with 30 mg/kg/day spermidine (Sigma-Aldrich, St. Louis, MO, S0266) dissolved in drinking water for at least a year. Conversely, the control group rats received water only. All surgical processes and postoperative care were approved by the Ethics Committee at the First Affiliated Hospital of Henan University of Science and Technology (no. 2021-03-B044) and carried out according to Institutional Animal Care and Use Committee guidelines.
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8

Nucleic Acid Preparation Protocol

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Magnesium chloride (MgCl2), sodium chloride (NaCl), Trizma (tris) base (2-amino-2-hydroxymethyl-1,3-propanediol), Tris-2-carboxyethyl-phosphine (TCEP), 200 proof ethanol, 10X Tris-EDTA, spermidine (99%) (Sigma- Alrich), 6-mercapto-1-hexanol (99%) (Sigma-Aldrich) were all used as received. The spermidine stock solutions and buffer solutions were prepared using ultrapure water (Mili-Q Ultrapure Water Purification, Milipore, Billerica, MA, USA). DNA sequences (Biosearch Technologies, Inc., Novato, CA, USA) were purified and synthesized using dual-HPLC.
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9

Analytical Standards for Metabolite Quantification

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The following standards were acquired from Sigma-Aldrich (Steinheim, Germany): glucose, sucrose, fructose, inositol, spermidine, spermine, cadaverine, putrescine, 1,6-hexaendiamine gallic acid, 6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid (Trolox), 2,2-azino-bis(3-ethylbenzothiazoline-6-sulphonic acid) diammonium salt (ABTS•+), and benzoyl chloride. Sodium hydroxide was purchased from Fluka (Buchs, Switzerland), and LC-MS grade organic solvents (Methanol, acetonitrile), together with sodium carbonate, Folin-Ciocalteu reagent, and ethyl ether, were purchased from Panreac Química (Barcelona, Spain). SPE cartridges (C18 Sep-Pak cartridges) were obtained from Waters Associates (Milford, MA, USA), and, lastly, ultrapure water was produced by a Millipore water purification system.
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10

Modulating Autophagy in Mosquitoes to Understand P. vivax Infection

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The transcriptome associated to P. vivax infection revealed a variety of transcripts that play a key role in autophagy. In order to evaluate the effect of the autophagy process in the outcome of infection, we inoculated mosquitoes with wortmannin (an inhibitor of phosphatidylinositol 3-kinase DPI3K) and spermidine (an autophagy activator) [36 (link), 37 (link)]. Three- to four-day-old female mosquitoes were cold-anesthetized and inoculated intrathoraxically with 69 nl of a 5 μM and 0.05 μM solution of wortmannin (Merck, Darmstadt, Germany) or with the same volume of H2O Ultra Pure and with 69 nl of a 100 μM solution of spermidine (Sigma) or DMSO (0.05%) using a Nanoject micro-injector (Drummond Scientific, Pennsylvania, USA). Twenty-four hours after injection with the solutions, the mosquitoes were fed with a P. vivax-infected blood meal as described above. Three independent biological replicates were performed for each experiment. Mosquitoes were dissected 18–24 h after feeding; batches of 20–30 midguts were dissected in cold DEPC-treated phosphate-buffered saline (PBS) and processed for RNA preparation and cDNA synthesis using the same protocols mentioned above. Mosquito midguts were also collected on the 8th day post-infection to determine the prevalence and intensity of infection.
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