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54 protocols using ethylene diamine tetraacetic acid (edta)

1

Investigating Cell Line Responses to Ion Modulators

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Rat astrocytic C6 glioma cells and human embryonic kidney (HEK)-293 cells were purchased from RIKEN Cell Bank (Saitama, Japan). Mouse embryonal carcinoma P19 cells were obtained from ATCC (Manassas, VA, USA). Mouse microglial BV-2 cells are a generous gift from Dr. Eui-Ju Choi (Korea University, Seoul, Korea) [28 (link)]. Poly-L-lysine, all-trans retinoic acid (ATRA), Hoechst33342, propidium iodide (PI), A23187, 3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bromide (MTT), 2-mercaptopyridine N-oxide sodium (pyrithione) and N,N,N’,N’-tetrakis(2-pyridylmethyl)ethylenediamine (TPEN) were purchased from Sigma-Aldrich fine Chemicals (St. Louis, MO, USA). Acetoxymethyl esters of Fluo-3, Rhod-2 and FluoZin-3 were provided by Molecular Probes (Eugene, OR, USA). Both EGTA and BAPTA-AM were supplied by Dojindo (Kumamoto, Japan). Dulbecco’s Modified Eagle Medium (DMEM) and alpha minimal essential medium (αMEM) were provided by Wako (Osaka, Japan). EDTA was purchased from Nacalai Tesque (Kyoto, Japan). Other chemicals used were all of the highest purity commercially available.
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2

Osteogenic Differentiation of Rat BMMSCs

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The rat BMMSCs were obtained from the femurs of OVX rats. BMMSCs were maintained in high glucose Dulbecco’s Modified Eagle’s Medium (Cyagen), with 10% fetal bovine serum (FBS; Cyagen) supplemented with 1% penicillin/streptomycin. The cells were cultured in a humidified atmosphere with 5% CO2 at 37°C. The medium was replaced every consecutive 3 days. After reaching 80% confluence, BMMSCs were trypsinized using 0.5 g/L trypsin and 0.53 mmol/L EDTA (Nacalai Tesque) and seeded on the specimens at a density of 2×104 cells/cm2. The medium was removed and replaced with osteogenic induction medium consisting of α-minimum essential medium (MEM), 15% FBS, 10 nM dexamethasone, 10 mM β-glycerophosphate, and 50 μg/mL ascorbic acid.
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3

Trypsin-EDTA Cell Harvesting and Immunostaining

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Cells were harvested by brief exposure to 0.25% trypsin/1 mM EDTA (Nacalai Tesque, Inc.). After rinsing with 0.1% BSA/PBS, the cells were treated with primary mAbs for 30 min at 4°C, and then with Alexa Fluor 488-conjugated anti-mouse IgG (1:1,000; Cell Signaling Technology, Inc., Danvers, MA). Fluorescence data were collected using EC800 Cell Analyzer (Sony Corp.).
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4

Cell Surface Protein Labeling

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The cells were harvested following brief exposure to 0.25% trypsin/1 mM EDTA (Nacalai Tesque, Inc.). The cells were washed with 0.1% BSA/PBS and treated with primary mAbs for 30 min at 4 °C. Thereafter, the cells were treated with Alexa Fluor 488-conjugated anti-mouse IgG (1:2000; Cell Signaling Technology, Inc., Danvers, MA, USA) or Oregon green anti-rat IgG (1:2000; Thermo Fisher Scientific Inc.). Fluorescence data were collected using SA3800 Cell Analyzers (Sony Corp., Tokyo, Japan).
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5

Cell Surface Protein Quantification

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CHO/mEGFR, CHO-K1, NMuMG, and Lewis lung carcinoma were harvested after a brief exposure to 1 mM ethylenediaminetetraacetic acid (EDTA, Nacalai Tesque Inc.). The cells were treated with EMab-300 or blocking buffer (control) (0.1% BSA in PBS) for 30 min at 4 °C, followed by treatment with Alexa-Fluor-488-conjugated anti-rat IgG. The data were analyzed using the SA3800 Cell Analyzer and SA3800 software ver. 2.05 (Sony Corp., Tokyo, Japan).
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6

Optimized Single-Cell Reprogramming Protocol

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iPS cells were removed from dishes at 80% confluence using CTK solution and washed DPBS (−). The removed cells were treated with 0.5× TrypLE Select solution. 0.5× TrypLE Select solution was prepared with 50% TrypLE Select, no phenol red (Thermo Fisher Scientific) and 0.25 mM EDTA (0.5 mol/L EDTA Solution (pH 8.0), Nacalai Tesque Inc.) in DPBS (−) for single-cell culture. The cells were collected in the medium with 10 μM Y-27632 (Fujifilm Wako Pure Chemical Corporation) and centrifuged. The supernatant was removed before use.
Feeder cells were seeded with 1.25 × 104 cells/well in a 96-well plate and cultured for 1 day in the medium including bFGF and Y-27632, and iPS cells were additionally seeded with 5000 cells/well and cultured for 1 day. The culture media was substituted by those supplemented with DMSO (CultureSure DMSO, Fujifilm Wako Pure Chemical Corporation) or ZIL. The cells were cultured until the control sample (which does not contain the solvents) became 80% confluent. The cell viability was confirmed by using Cell Count Reagent SF (Nacalai Tesque Inc.). The culture media was substituted by the media supplemented with 10% of Cell Count Reagent SF and incubated for 1 h. After incubation, absorption at 450 nm was measured and translated to the cell viability with a standard curve.
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7

Intestinal Epithelial Cell FACS Isolation

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FACS analysis and cell sorting were performed as described previously [48] (link). In brief, the small intestine was cut longitudinally and washed in cold PBS. Then, a 2-cm piece of intestine was cut and incubated in 2% (vol/vol) fetal calf serum in RPMI 1640 (Wako) containing 0.5 mM EDTA (Nacalai Tesque) for 15 minutes at 37°C. Cells were filtered with a 70-μm cell strainer (Becton Dickinson) and blocked with Fc Block (2.4G2; Becton Dickinson) for 5 minutes at room temperature, followed by staining antibodies and reagents for 30 minutes at 4°C. Dead cells were excluded by propidium iodide (PI) staining. Epithelial cell fraction was defined by PICD45TER119EpCAM+ gating and biotinylated HKH-189 was used for Cld4 staining. Samples were analyzed by FACSCanto (Becton Dickinson) or sorted by FACSAria (Becton Dickinson).
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8

Triglyceride and Apo B Quantification

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Cultured cells were washed with PBS, collected using a cell scraper into a triglyceride assay buffer [5% Triton X-100 (Nacalai Tesque), 1 mM EDTA (Nacalai Tesque), and 25 mM Tris-HCl pH 7.5], and lysed by sonication. The triglyceride contents in the cell lysates and supernatants and the apo B contents in the supernatants were detected using a Triglyceride Assay Kit (BioAssay Systems, Hayward, CA, USA) and a Total Human Apo B ELISA Assay Kit (ALerCHEK Inc., Portland, ME, USA), respectively, according to the manufacturer's instructions. The absorbance signals were measured with a Multiskan FC microplate reader (Thermo Fisher Scientific, Waltham, MA, USA).
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9

ALDH Activity Quantification in Hec1 Cells

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Hec1 cells were harvested using 0.25% trypsin/1 mM EDTA (Nacalai Tesque) solution and evaluated for aldehyde dehydrogenase (ALDH) activity using the ALDEFLUOR assay kit per the manufacturer's instructions (STEMCELL Technologies, Vancouver, Canada). Flow cytometry was conducted using the FACS Caliber or FACSVerse (BD Biosciences, San Jose, CA).
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10

Isolation of Amniotic Membrane for Oral Epithelial Cell Culture

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We obtained AM from women undergoing cesarean section. We collected tissue from AM for our clinical purposes. We sufficiently explained the proposed use to the women and obtained their informed consent. We washed the membranes under aseptic conditions with phosphate-buffered saline (PBS) containing 5 ml of 0.5% levofloxacin and stored them at −80°C in Dulbecco’s modified Eagle’s medium (GIBCO/Invitrogen, Carlsbad, CA, USA) and glycerol (1:1, v:v; Wako Pure Chemical Industries, Ltd., Osaka, Japan). AM was thawed immediately before use for the oral epithelial cell culture and washed three times with PBS. In the oral epithelial cell cultures, membranes were deprived of their amniotic epithelial cells by incubating with 0.02% EDTA (Nacalai Tesque, Inc., Kyoto, Japan) at 37°C for 2 h to loosen cellular adhesion, followed by gentle scraping with a cell scraper (Nalge Nunc International, Naperville, IL, USA) to remove the amniotic epithelial cells.
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