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3 protocols using phospho rela ser536

1

Dissection and Analysis of Nuclear Proteins

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Cell extracts were prepared using buffer (150 mM Tris-HCl pH 8, 150 mM NaCl, 5 mM EDTA,10 mM NaF, 1 mM Na3VO4, 0.5% NP-40, 2% sodium dodecyl sulfate, 10% glycerol, 10 mM DTT, 1 mM PMSF, protease inhibitor cocktail (Roche)). Nuclei were isolated using nuclear lysis buffer A (20 mM Tris-HCl pH 8.0, 10 mM NaCl, 5 mM EDTA, 0.5% NP-40, 1 mM PMSF, protease inhibitor cocktail) followed by centrifugation at 16000 g for 20 s. Nuclear pellets were sonicated in lysis buffer B (20 mM Tris-HCl pH 8.0, 400 mM NaCl, 5 mM EDTA, 0.5% NP-40, 1 mM PMSF, protease inhibitor cocktail). Protein lysates were separated on polyacrylamide gels followed by transfer onto nitrocellulose membranes. Membranes were incubated with antibodies against phospho-IKK (Ser176/Ser180) (#2697), phospho-p38 MAP kinase (Thr180/Tyr182) (#9211), phospho-ERK (Thr202/Tyr204) (#9101), phospho-cJun (Ser73) (#3270), IKKβ (#8943), ERK (#4696), p38 MAP kinase (#9212), RelA (#8242), phospho-RelA (Ser536) (#3033), IκB (#4814) (all Cell Signalling Technology) or nucleolin (sc-13057) (Santa Cruz Biotechnology) followed by IRDye 800-coupled secondary antibodies (LICOR Biosciences). Blots were visualized and quantified using the Odyssey imaging system (LICOR Biosciences).
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2

Quantifying Phosphorylated Signaling Proteins

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Proteins were extracted by lysed tumor cells using RIPA lysis and extraction buffer (Thermo Fisher Scientific). The western blot analysis was used to determine the expression of total and phosphorated proteins. The intensity of protein bands was detected using ECL Plus (GE Healthcare Life Sciences) using the ChemiDoc Imaging System (Bio-Rad). The antibodies targeting Phospho-IκBα (Ser32) (clone 14D4, #9246), IκBα (clone 44D4, #4812), Phospho-RELA (Ser536, #3033), RELA (clone D14E12, #8242) and β-actin (8H10D10, #3700) were purchased from the Cell Signaling Technology and used for western blot analysis.
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3

Western Blot Analysis of Immune Regulators

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Cells were lysed in RIPA buffer (Thermo Fisher, 89900) supplemented with phosphatase and protease inhibitors and subjected to SDS-PAGE. Antibodies used were ERa (Santa Cruz Biotechnology; cat. #sc-543, RRID:AB_631471), RelA/p65 (Cell Signaling Technology; cat. #6956, RRID:AB_10828935), phospho-RelA Ser536 (Cell Signaling Technology; cat. #3033, RRID:AB_331284), GAPDH (Santa Cruz Biotechnology; cat. #sc-25778, RRID:AB_10167668), RelB (Cell Signaling Technology; cat. #10544, RRID:AB_2797727), NF-κB1 p105/50 (Cell Signaling Technology; cat. #12540, RRID:AB_2687614), NF-κB2 p100/52 (Cell Signaling Technology cat. #3017, RRID:AB_10697356), IRF1 (Cell Signaling Technology; cat. #8478, RRID:AB_10949108), STAT1 (Cell Signaling Technology; cat. #9176, RRID:AB_2240087), phospho-STAT1 Tyr701 (Cell Signaling Technology; cat. #9167, RRID:AB_561284), MHC-I (Thermo Fisher Scientific; cat. #MA5-11723, RRID:AB_10985125), PD-L1 (Abcam; cat. #ab228415, RRID:AB_2884993).
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