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7 protocols using western lightning plus ecl chemiluminescence reagent

1

Western Blotting Analysis of Renal Proteins

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This technique was used for determination of protein expression of Nrf2, HO-1, pThr180/Tyr182-p38 MAPK, pThr183/Tyr185-JNK, Bax, and Bcl-2 in renal tissues [36 (link),37 (link)]. Briefly, the renal tissues were washed, homogenized (pre-cold lysis buffer), and supplemented with protease/phosphatase inhibitor cocktails (Sigma, St. Louis, MO, USA). Total proteins determination was performed colorimetrically. Thirty µg of protein were incubated for 18–20 h at 4 °C with antibodies against Nrf2 (CAT # PA5-68817, Thermo Scientific, MA, USA), HO-1 (CAT.# ab13243, Abcam, CB, UK), JNK (CAT.# ab179461, Abcam, CB, UK), p-p38MAPK (CAT.# b170099, Abcam, CB, UK), Bax (CAT # MA5-14003, Thermo Scientific, MA, USA), Bcl-2 (CAT# PA5-27094, Thermo Scientific, Waltham, MA, USA), and β-actin (1:2500, # A5060, Sigma, St. Louis, MO, USA). After membrane washing, suitable secondary antibodies (Dako, Glostrup, Denmark) incubation was done. The Western Lightning Plus ECL Chemiluminescence Reagents (Perkin Elmer, Waltham, MA, USA) were mixed, applied, and the band signals/intensities were then captured via Chemi-Doc imager (Bio-Rad, Hercules, CA, USA).
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2

Western Blot Analysis of Breast Cancer Markers

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Cells were lysed in whole cell extract buffer containing 100mM Tris-HCl pH8.0, 2mM EDTA, 0.02% SDS, 0.5% Nonidet P-40 and 150mM NaCl and 1x protease inhibitors (Sigma). Protein samples were separated on a 10% SDS Page polyacrylamide gel, transferred to nitrocellulose membranes and the following antibodies were used for detection: ERα(D-12, Santa Cruz Biotechnology), AGR2 (Abnova), FOXA1 (Abcam), β-Actin (ACTB; Sigma) and cytokeratin 18 (KRT18; Santa Cruz Biotechnology). Appropriate horseradish peroxidase conjugated secondary antibodies (BioRad) were used and the proteins detected using Western Lightning® Plus ECL chemiluminescence reagents (Perkin-Elmer).
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3

Antibody Production and Immunoblot Analysis

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Antibodies against R. rubrum BacA were raised by immunization of rabbits with purified BacA-His6 protein (Eurogentec, Belgium). Cells were harvested in the exponential growth phase. Immunoblot analysis was conducted as described previously (Thanbichler and Shapiro, 2006 (link)), using anti-BacA antiserum (1:10.000), a monoclonal anti-mNeonGreen antibody (Chromotek, Germany; Cat. #: 32f6; RRID: AB_2827566), a polyclonal anti-GFP antibody (Sigma, Germany; Cat. #: G1544; RRID: AB_439690), a polyclonal anti-mCherry antibody (BioVision, USA; Cat. #: 5993; RRID: AB_1975001) or a monoclonal anti-HA antibody (Merck Millipore, USA; Cat. #: 05–904; RRID: AB_11213751) at dilutions of 1:10,000, 1:1000, 1:10,000, 1:10,000 or 1:1000, respectively. Goat anti-rabbit immunoglobulin G conjugated with horse-radish peroxidase (Perkin Elmer, USA) or goat anti-mouse immunoglobulin G conjugated with horse-radish peroxidase (Sigma, Germany) were used as secondary antibodies. Immunocomplexes were detected with the Western Lightning Plus-ECL chemiluminescence reagent (Perkin Elmer, USA). The signals were recorded with a ChemiDoc MP imaging system (BioRad, Germany) and analyzed using Image Lab software (BioRad, Germany).
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4

Immunoblot Analysis of GFP Expression

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Immunoblot analysis was conducted as described previously80 (link), using a polyclonal anti-GFP antibody (Sigma-Aldrich, Germany; Cat. #: G1544; RRID: AB_439690) at a 1:10,000 dilution. Goat anti-rabbit immunoglobulin G conjugated with horseradish peroxidase (PerkinElmer, USA) was used as secondary antibody. Immunocomplexes were detected with the Western Lightning Plus-ECL chemiluminescence reagent (PerkinElmer, USA). The signals were recorded with a ChemiDoc MP imaging system (BioRad, Germany) and analyzed using the Image Lab 5.0 software (BioRad, Germany).
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5

Western Blot Analysis of Cell Regulators

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Western blot analysis was performed as described [54 (link)], using anti-CtrA [99 (link)], anti-FtsZ [63 (link)], anti-MipZ [54 (link)], anti-DnaA [100 (link)], or anti-SpmX [88 (link)] at dilutions of 1:10,000 (anti-CtrA, anti-FtsZ, anti-MipZ, and anti-DnaA), and 1:50,000 (anti-SpmX). Goat anti-rabbit immunoglobulin G conjugated to horseradish peroxidase (Perkin Elmer, USA) was used as secondary antibody. Immunocomplexes were detected using the Western Lightning Plus-ECL chemiluminescence reagent (Perkin Elmer, USA). Signals were recorded with a ChemiDoc MP imaging system (Bio-Rad) and analyzed using the Image Lab 5.0 software (Bio-Rad).
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6

Immunoblot Analysis of GFP Expression

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Cells were harvested in the exponential growth phase and subjected to immunoblot analysis as described previously87 (link), using a polyclonal anti-GFP antibody (Sigma, Germany; Cat. #: G1544; RRID: AB_439690) at a 1:10,000 dilution. Goat anti-rabbit immunoglobulin G conjugated with horseradish peroxidase (Revvity, USA; Cat. #: NEF812E001EA; at a 1:20,000 dilution) was used as a secondary antibody. Immunocomplexes were detected with the Western Lightning Plus-ECL chemi-luminescence reagent (Perkin Elmer, USA). The signals were recorded with a ChemiDoc MP imaging system (Bio-Rad, Germany) and analyzed using Image Lab software (Bio-Rad, Germany).
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7

SF3B1 Knockdown and FAS Exon 6 Mutant Analysis

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This section refers to the SF3B1 knock-down experiment (Figure 4G), where the doped library of FAS exon 6 mutants was transfected in the presence of a control siRNA or in the presence of an siRNA against SF3B1. Protein extracts were fractionated by electrophoresis in 10% native acrylamide:bisacrylamide (30:0.8%) gels, and semi-dry transferred onto a 0.45 mM nitrocellulose membrane (Protran BA85 10401196, Whatman). The following primary antibodies were used for western blot analysis: rabbit polyclonal anti-SF3B1 (Abcam, ab39578) and anti-GAPDH mouse monoclonal (6CS) (Abcam, ab8245). The following secondary antibodies were then incubated with the membranes: ECL rabbit or mouse IgG, HRP-Linked Whole Ab (GEHealthcare, NA9340 or NA931). After extensive washes the bound antibodies were detected using the Western Lightning Plus ECL chemiluminescence reagent (Perki-nElmer, NEL105001EA) and exposed to Kodak BioMax MR film (Sigma-Aldrich, Z353949).
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