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6 protocols using vivaspin 20 spin filters

1

Enzymatic Production of Sialic Acid Derivatives

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Lysogeny broth (LB), isopropyl β-d-thiogalactopyranoside (IPTG), NAD+, and NADH were
purchased from Research Products International. The protease inhibitor
cocktail, lysozyme, DNase I, UDP-GlcNAc, ManNAc, neuraminic acid,
uridine 5′-diphosphate (UDP), cytidine 5′-triphosphate
(CTP), cytidine 3′,5′-cyclic monophosphate, phosphoenolpyruvate
(PEP), pyruvate kinase, lactate dehydrogenase, sialic acid aldolase,
pyrophosphatase, kanamycin, dithiothreitol (DTT), imidazole, and HEPES
were obtained from Sigma-Aldrich. Ammonium bicarbonate, 2-mercaptoethanol,
KCl, MnCl2, and MgCl2 were acquired from Sigma-Aldrich.
Vivaspin 20 spin filters and HisTrap and HiTrap Q HP columns were
obtained from Cytiva. The 10 kDa Nanosep spin filters were purchased
from Pall Corp. (Port Washington, NY). Deuterium oxide was acquired
from Cambridge Isotope Laboratories Inc., and 18O-labeled
water (98%) was obtained from Medical Isotopes Inc.
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2

Purification of Recombinant Protein

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Lysogeny broth (LB), isopropyl-β-d-thiogalactopyranoside (IPTG), and NADPH were purchased from Research Products International. The protease inhibitor cocktail, lysozyme, kanamycin, imidazole, and 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES) were obtained from Sigma-Aldrich. Potassium phosphate, 2-mercaptoethanol, KCl, and MgCl2 were acquired from Sigma-Aldrich. DNase I was purchased from Roche. HisTrap columns and Vivaspin 20 spin-filters were obtained from Cytiva. The 3 kDa Nanosep spin-filters were purchased from Pall Corporation (Port Washington, NY). Deuterium oxide was acquired from Cambridge Isotope Laboratories Inc.
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3

Purification and Analysis of Enzymes

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Lysogeny broth (LB) medium, isopropyl-β-d-thiogalactopyranoside
(IPTG), and NADPH were purchased from
Research Products International. The protease inhibitor cocktail,
lysozyme, DNase I, glutamate dehydrogenase, acetaldehyde dehydrogenase,
acetaldehyde, kanamycin, imidazole, Tris, HEPES, PLP, and l-glutamate were obtained from Sigma-Aldrich. Ammonium bicarbonate,
potassium phosphate, 2-mercaptoethanol, KCl, and MgCl2 were
also acquired from Sigma-Aldrich. DNase I was purchased from Roche.
Vivaspin 20 spin filters and HisTrap and HiTrap Q columns were obtained
from Cytiva. The 10 kDa Nanosep spin filters were purchased from Pall
Corporation (Port Washington, NY). Deuterium oxide was acquired from
Cambridge Isotope Laboratories Inc., and oxygen-18 labeled water (98%)
was obtained from Medical Isotopes Inc.
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4

Purification of Recombinant Protein

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Lysogeny broth (LB) medium, isopropyl-β-d-thiogalactopyranoside (IPTG), and NADPH were purchased from Research Products International. The protease inhibitor cocktail, lysozyme, kanamycin, imidazole, Tris, and HEPES were obtained from Sigma-Aldrich. Ammonium bicarbonate, 2-mercaptoethanol, KCl, and MgCl2 were acquired from Sigma-Aldrich. DNase I was purchased from Roche. HisTrap columns and Vivaspin 20 spin filters were obtained from Cytiva. The 3 kDa Nanosep spin filters were purchased from Pall Corporation (Port Washington, NY). Deuterium oxide was acquired from Cambridge Isotope Laboratories Inc. Oligonucleotide primers were bought from Integrated DNA Technologies Inc. Polymerase chain reaction (PCR) reagents, pfu polymerase, pfu polymerase buffers, Escherichia coli XL1 Blue and BL21 (DE3) strains were purchased from New England Biolabs. The kit for isolation of DNA was obtained from Qiagen.
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5

Purification and Analysis of Enzyme Intermediates

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Lysogeny broth (LB) medium, isopropyl β-d-thiogalactopyranoside (IPTG), and NADPH were purchased from
Research Products International. The protease inhibitor cocktail,
lysozyme, DNase I, acetaldehyde dehydrogenase, pyrophosphatase, d-fructose-6-P, d-fructose-1-P, d-glucose-6-P, d-glucose-1-P, d-glucitol-6-P, CTP, UTP, ATP, GTP,
NADPH, NADH, acetaldehyde, kanamycin, imidazole, and HEPES were obtained
from Sigma-Aldrich. Vivaspin 20 spin filters and HisTrap and HiTrap
Q columns were obtained from Cytiva. The 10 kDa Nanosep spin filters
were purchased from Pall Corp. (Port Washington, NY). Deuterium oxide
was acquired from Cambridge Isotope Laboratories Inc.
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6

Synthesis and Purification of GDP-D-glycero-α-D-manno-heptose

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All
materials used in this study were obtained
from Sigma-Aldrich, Carbosynth, or GE Healthcare Biosciences, unless
otherwise stated. Lysogeny broth (LB) and isopropyl-β-d-thiogalactopyranoside (IPTG) were purchased from Research Products
International. HisTrap columns and Vivaspin 20 spin filters were obtained
from Cytiva. The 3 and 10 kDa Nanosep spin filters were purchased
from Pall Corporation (Port Washington, NY). Deuterium oxide was purchased
from Cambridge Isotope Laboratories, Inc. Escherichia coli strain BL21-Gold (DE3) was obtained from New England Biolabs. α-Ketoglutarate
was purchased from AK Scientific (Union City, CA). Ultraviolet spectra
were recorded on a SpectraMax340 (Molecular Devices) ultraviolet–visible
plate reader using 96-well Greiner plates. 1H NMR and 1H–1H COSY spectra were recorded on a Bruker
Avance III 400 MHz system equipped with a broadband probe and sample
changer. Mass spectrometry data were collected on a Thermo Scientific
Q Exactive Focus system run in the negative-ion mode. GDP-d-glycero-α-d-manno-heptose (5) was synthesized and purified as described
previously.20 (link)
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