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The A27040 is a piece of laboratory equipment manufactured by Thermo Fisher Scientific. It is designed to perform a specific core function within the laboratory setting. However, without more detailed information about the product, I cannot provide a concise and unbiased description of its capabilities while avoiding any interpretation or extrapolation. Therefore, the detailed description is not available.

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12 protocols using a27040

1

Whole-mount Immunofluorescence Assay Protocol

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Whole-mount immunofluorescence assay was performed essentially as described previously (Zhang et al., 2012 (link); Xue et al., 2014 (link)). Primary antibodies for immunofluorescence were: mouse anti-GFP (1:200; sc-9996, Santa Cruz), rabbit anti-GFP (1:800; Ab290, Abcam), mouse anti-acetylated tubulin (1:400; T6793, Sigma), rabbit anti-aPKC (1:100; sc-216, Santa Cruz), rabbit anti-pH3 (1:200; #9701, Cell Signaling Technology), rabbit anti-active capase3 (1:200; BD 559565, BD Biosciences), mouse anti-GST (1:400; BE2075, EASYBIO), rabbit anti-p-MLC2 (Thr18/Ser19) (1:200; #3674, Cell Signaling Technology), and rabbit anti-RhoA (1:500; BS1782, Bioworld) antibodies. Secondary antibodies were Alexa Fluor 488- or 649-conjugated anti-mouse IgG (1:100; 115-545-003 and 115-605-003, Invitrogen) and Alexa Fluor 488- or 649-conjugated anti-rabbit IgG (1:100; A11008 and A27040, Invitrogen) antibodies. For imaging, the embryo region containing DFCs or KV was dissected, embedded in the mounting medium and were observed under a Zeiss LSM META confocal microscope. Confocal images of DFCs were acquired as a z-series with a step-size of 2 μm and those of KV as a z-series with a step-size of 1 μm.
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2

Imaging S1R Localization in HEK293T Cells

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For imaging S1R localization in HEK293T cells, cells were cultured on glass coverslips in 24-well plates. Each well was transfected with 150 ng of S1R-GFP plasmid (WT or mutant) and 150 ng of mCherry-Sec61β using Lipofectamine LTX Plus (Thermo Fisher Scientific) according to the manufacturer’s instructions. Cells were fixed 48 hr post-transfection in 4% paraformaldehyde (PFA) in phosphate buffered saline (PBS) solution for 20 min, permeabilized and blocked with 5% bovine serum albumin (BSA), 0.1% Triton X-100 in PBS for 1 hr, and stained with anti-mCherry (16D7, 1:500, Invitrogen) and anti-TOM20 antibodies (FL-145, 1:500, Santa Cruz Biotechnology) overnight at 4°C. Next day, cells were washed and incubated with secondary antibodies (594 donkey anti-rat, A21209, 1:1000, Invitrogen; 647 goat anti-rabbit, A27040, 1:1000, Invitrogen) for 1 hr at room temperature. Cells were washed thrice with PBS and mounted using Aqua Polymount solution (Polysciences). Cells were visualized using fluorescent confocal microscope (Leica) with 63× oil immersion objective.
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3

Immunofluorescent Imaging of NF-κB Activation

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Coverslips (#1.5, 18mm, Thomas Scientific 1217N81) treated with poly-L-lysine were seeded with HeLa cells in 6-well plates and stimulated with TNFα as described. Wells were washed with PBS, fixed with 4% PFA at RT for 15 min, then washed 3x with PBS. For subsequent steps, coverslips placed with cells facing down on a sheet of Parafilm, such solution volumes (100μL) were sandwiched between the coverslip and Parafilm. Cells were blocked and permeabilized at RT for 30 min (1X PBS, 5% normal goat serum, 0.3% Triton X-100), incubated with 1:200 p65Ab (BioLegend cat #622601) in antibody solution (5% BSA, 0.02% Tween 20 in 1X PBS) for 1 hr at RT, and washed 3x with PBST (1X PBS, 0.02% Tween 20). Anti-rabbit Alexa Fluor 647 secondary (Invitrogen A27040) was added at 1:1000 in PBST for 1 hr in dark at RT, then washed 4x with PBST, with the final wash containing 1:1000 DAPI. Coverslips were mounted onto SuperFrost slides (Fisher Scientific 22-037-246) with antifade (ThermoFisher Scientific S36937) and sealed with nail polish. Slides were stored at 4°C until imaging.
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4

Immunocytochemical Analysis of Astrocyte Markers

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Cells on a chamber slide were incubated with anti-O4 antibodies (1:200; #MAB345, Sigma-Aldrich) for 5 min and fixed in 4% paraformaldehyde solution for 15 min at 37 °C. Following permeabilization with PBS containing 0.2% Triton X-100 and 3% goat serum for 1 h, cells were incubated with Cy3-conjugated anti-GFAP (1:200; C-9205, Sigma-Aldrich) and anti-PU.1 antibodies (1:500; 2258S, Cell Signalling) at 4 °C. The next day, cells were stained using Alexa Fluor 488-conjugated anti-mouse IgM antibodies (1:500; A21042, Invitrogen), Alexa Fluor 647-conjugated anti-rabbit antibodies (1:500; A27040, Invitrogen) and Hoechst 33342 (1 mg/mL; Invitrogen). Percentage of cells positive for GFAP, O4 or IBA1 staining in astrocyte culture was quantified using a CellInsight CX7 High Content Screening Platform (ThermoFisher). All conditions were assessed in triplicate.
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5

Immunofluorescence Staining of Kidney Cells

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Antibodies used were: mouse monoclonal anti-GAPDH (1:1,000; ab8245; Abcam), rabbit monoclonal anti-TOM20 Alexa Fluor 647 (1:500; ab209606; Abcam), Alexa Fluor 488 Goat anti-mouse (1:300; A11004; Invitrogen), Alexa Fluor 647 Goat anti-rabbit (1:300; A27040; Invitrogen), rabbit polyclonal anti-NPHS2 (1:300; ab50339; Abcam), mouse monoclonal anti-CYTOKERATIN (1:300; #ab86734; Abcam), and anti-cleaved caspase-3 (1:200; Cell Signaling, #9661).
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6

FGFR1 Quantification in Single Cells

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Cells were fixed in 4% paraformaldehyde (10 min), permeated with 0.2% Triton X-100 (15 min), and blocked with 1% bovine serum albumin (30 min). The anti-FGFR1 primary antibody (ab824, Abcam) was incubated for 90 min, and the AlexaFluor 647 goat anti-rabbit (A27040, Invitrogen) secondary antibody for 45 min. Then, cells were incubated with DAPI (Sigma) for 10 min to stain nuclei. A filter of 30-µm was used to remove cell aggregates. ImageStreamX Mark II Flow Cytometer (EMD Millipore) was used to acquire single cells images at 60× magnification. The acquired raw image file (.rif) contained among 500 and 2000 events (10–30 events per second). The analysis of single cells fluorescence intensity and nucleus diameter was performed by using IDEAS software (version 6.2.64.0). To consider only single cells, a dot plot showing area versus aspect ratio (AR) was created. To estimate FGFR1 intensity in nuclear region, we generated a morphology mask that defined nucleus stained by DAPI and to measure the fluorescent signal in nuclear area.
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7

Apoptosis Signaling Pathway Analysis

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Activate caspase-3 (BD Biosciences, 559565, 1:700), Sphingosine 1-Phosphate (Echelon Biosciences, ZP-300, 1:100) and Phospho-myosin antibody (Sigma Millipore, PA5–17727, 1:100) were used. Secondary antibodies (Thermo Fisher, A-21235 and A27040) were diluted at 1/250.
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8

Multicolor Immunofluorescence Staining

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Anti-HER2 (ab214275, Abcam, Cambridge, UK), actin (A2066, Sigma-Aldrich, Oslo, Norway), goat-anti-rabbit-HRP (65–6120, ThermoFisher, Oslo, Norway), goat anti-mouse-AF488 (ab150117, Abcam, Cambridge, UK), goat anti-rat-PE (405406, Biolegend, Oslo, Norway), goat anti-rat-AF546 (A11081, ThermoFisher, Oslo, Norway), goat anti-rabbit-AF647 (A27040, ThermoFisher, Oslo, Norway), horse-anti-mouse-HRP (7076S, Cell Signaling Technology, Danvers, MA, USA) and Fixable Viability Dye eFluor™ 780 (eBioscience, Oslo, Norway).
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9

Quantifying GSK3β in Muscle Fiber Types

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To assess the fiber type expression of GSK3β, we performed immunofluorescent microscopy experiments on serial 10 μm cryosections obtained from O.C.T. (optimal cutting temperature) embedded soleus and EDL muscles from n = 3 mobile wild-type C57BL/6J male mice. One serial cryosection underwent immunofluorescent fiber type staining as previously described to demarcate the various fiber types with MHC I, IIa, IIx, and IIb isoforms.30 (link),47 (link) The other serial cryosection underwent immunofluorescent staining with a primary antibody for GSK3β (9315, Cell Signaling, 1:2500 dilution) and an anti-rabbit Alexa Fluor 647 fluorescent secondary antibody (A27040, ThermoFisher Scientific, 1:5000 dilution). Once fiber types were identified with MHC isoform expression/fluorescence, GSK3β was quantified by converting the image to grayscale and quantifying the mean gray value with ImageJ. Within a single muscle, 10 of each fiber type were randomly analyzed.
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10

Immunofluorescence Staining of HUVECs

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For immunofluorescence staining, HUVECs were fixed using 4% paraformaldehyde (PFA) in HBSS+ for 10 min at room temperature. The fixative was aspirated, and the cells were rinsed once with HBSS+. Next, the cells were permeabilized for 2 min with 0.2% Triton X-100 in HBSS+ and washed once with HBSS+. The cells were blocked in 5% BSA in HBSS+ for 30 min and incubated with the primary antibody solution overnight at 4°C. Mouse anti-human CD144 (1:150; 555661, BD Biosciences, USA), sheep anti-human CD31 (1:150; AF806, R and D Systems, The Netherlands) and rabbit anti-human vWF (1:1000; A0082, Agilent Dako, USA) were used as the primary antibodies. The cells were washed with HBSS+, followed by an one-hour incubation with Hoechst (1:2000; H3569, Invitrogen, USA), rhodamine phalloidin (1:200; P1951, Sigma-Aldrich, The Netherlands) and the secondary antibody solution, containing Alexa Fluor 488-conjugated goat anti-mouse (1:250; R37120, ThermoFisher, USA), Alexa Fluor 488-conjugated donkey anti-sheep (1:250; A11015, ThermoFisher, USA) and Alexa Fluor 647-conjugated goat anti-rabbit (1:250; A27040, ThermoFisher, USA) antibodies. The cells were washed three times with HBSS+. High-quality Z-stack images of the stained cells were acquired using a high-content confocal microscope (Molecular Devices, ImageXpress Micro Confocal).
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