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8 protocols using collagenase 4

1

Isolation and Analysis of Intestinal Immune Cells

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Small intestine and colon tissues were digested with Collagenase IV (Yeasen Biotech Co., Ltd., Shanghai, China) at 37°C for 2 h, then filtered through a 70-μm cell strainer (Corning Incorporated, Corning, NY, USA) to obtain the single cells. MLNs were gently ground and then suspended in PBS, followed with filtering through a 70-μm cell strainer to obtain single cells. The single-cell suspensions were then incubated in the dark with anti-mouse antibodies to CD45.2 and CD45R. Intracellular staining was performed using a Foxp3 Staining Buffer Kit (eBioscience catalog number 00-5523-00) for IgA marker. Analysis was performed immediately by using an FACSCalibur™ flow cytometer (Becton-Dickinson, Fullerton, CA, USA).
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2

Tumor Immune Cell Characterization

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Tumors were excised on day 14 after inoculation. The isolated tumor tissues were digested with Collagenase IV (Yeasen Biotech Co., Ltd., Shanghai, China) at 37 °C for 2 h, and then filtered through a 70-μm cell strainer (Corning Incorporated, Corning, NY, USA) to obtain the single cells. The harvested cells were washed twice with PBS, and then stained in the dark with anti-mouse antibodies for CD4 (GK1.5), CD8 (53-6.7), CD45 (30-F11) (BioLegend, San Diego, CA, USA) at 4 °C for 30 min. Analysis was performed immediately by using an FACS Calibur flow cytometer (Becton-Dickinson, Fullerton, CA, USA).
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3

Isolation of Primary Murine Hepatocytes

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Primary hepatocytes were isolated from male C57BL/6J mice at 6–8 weeks of age. The mice were anesthetized and perfused with perfusion buffer and collagenase IV (1 mg/mL, Yeasen, China) through the portal vein at 37 °C. The liver of each mouse was cut, dispersed, and filtered through a 70-μm cell strainer (Thermo Fisher Scientific, USA) and centrifuged at 1000×g for 5 min at 4 °C. The cells were resuspended in DMEM supplemented with 10% FBS and incubated at 37 °C in 5% CO2. After incubation for 24 h, the hepatocytes were attached to the culture plate, and the other unattached cells were removed by replacing the culture medium.
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4

Tumor-Infiltrating Lymphocyte Analysis by Flow Cytometry

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The infiltration of lymphocytes in tumor tissue was analyzed by flow cytometry, as described elsewhere (20 (link)). To generate single cell from the tumor tissue (100-200 mg), Collagenase IV (Yeasen Biotech, Shanghai, China) was employed to digest the tissue in HBSS at 37°C for 30 minutes. The single cells were obtained by filtering the mixture through a 70 μm cell strainer (BD, Franklin Lakes, USA). Then, surface staining with anti-mouse antibodies for CD45 (GK1.5), CD4 (30-F11) and CD8 (53-6.7) was carried out on the single cells in the dark at 4°C for 30 min. After washing twice with PBS, the stained cells were fixed in a Foxp3/Transcription Factor Staining Buffer Set (eBioscience, San Diego, USA) in the dark at 4°C for 30 min. Subsequently, the fixed cells were permeabilized and stained with antibodies for IFN γ (XMG1.2) in the dark at 4°C for 30 min. Finally, the cells were washed twice, suspended in fluorescence-activated cell sorting (FACS) buffer, and analyzed using a FACS Calibur flow cytometer (BD, Franklin Lakes, USA). FlowJo software (TreeStar, Ashland, USA) was utilized to interpret the results.
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5

Mitochondrial Respiration and Metabolism

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Oligomycin, cyanide p-trifluoromethoxyphenyl-hydrazone (FCCP) and rotenone were purchased from Seahorse Biosciences, USA; 2-Deoxy-D-glucose, glucose, palmitic acid (Palm.), rapamycin were purchased from Sigma-Aldrich, USA; Recombinant IL-22 proteins were obtained from Novoprotein, China; dorsomorphin, LY294002, cisplatin (Cisp.), 5,5′,6,6′-tetrachloro-1,1′,3,3′-tetraethylbenzimidazolylcarbocyanine iodide (JC-1), TRNzol reagent, MitoTracker Green, SYBR Green qPCR mix, MMLV reverse transcriptase were provided by Beyotime Biotechnology, China; ethanol (Eth.), carbon tetrachloride (CCl4) were obtained from Sinopharm, China; MitoTracker Red, Hoechst33342, PKH26, MitoSOX were purchased from Invitrogen, USA. Collagenase IV was obtained from Yeasen, China. Percoll was purchased from GE, USA. Antibodies targeting AKT, p-AKT (S473), mTOR, p-mTOR (S2448), p-STAT3 (Y705), p-PI3K (Tyr199), p-p70S6K, HK-2, c-Myc, Bad, Bcl-2 were obtained from Cell Signaling Technology, USA; Antibodies for Glu1, AMPK, p-AMPKα, IL-22R1, β-Actin and GAPDH were provided by Abcam, USA.
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6

Isolation of Immune Cells from Intestine and Heart

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The intestines were incubated in HBSS containing 5  mM EDTA at 37 °C with shaking for 20 min [1 (link),26 (link)], and then cut into small pieces, digested with RPMI 1640 containing 10% FBS, collagenase IV (100  mg/mL, Yeasen, Shanghai, China), DNase I (50 mg/mL, Yeasen) at 37 °C for 1 h in a thermostatic oscillator. Fresh heart tissues were washed with cold PBS and cut into small pieces, then digested with RPMI 1640 containing 10% FBS, collagenase II (50 U/μL, Gibco, New York, NY, USA), and hyaluronidase (30 mg/mL, Sigma, Livonia, MI, USA) at 37 °C for 1 h.
The digested tissues were filtered through a 70 μm cell strainer. The cells were resuspended in a discontinuous 40/80% Percoll gradient at 500 g for 30 min. The immune cells were collected at the interface of the Percoll gradient.
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7

Single-Cell Isolation and T-Cell Activation

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All the experiments involving human samples were in accordance with the ethical standards of the institutional and/or national research committee and with the 1964 Helsinki Declaration and its later amendments or comparable ethical standards, based on informed consent. Tumor tissues were obtained from a patient with HCC who underwent surgery at Fudan University Shanghai Cancer Center. The samples were enzymatically digested using collagenase I, collagenase IV, and hyaluronidase (YEASEN, Shanghai, China) for 1 hr at 37°C. Single-cell suspensions were filtered with 70-µm filter units (Coring Falcon, NY, USA), and then incubated with diabody-mp or diabody-pm at 37°C for 48 hr. The hPBMCs were isolated from healthy individuals using Ficoll-Paque (GE Healthcare, Little Chalfont, UK). Autologous T cells were enriched using RosetteSep™ human T cell enrichment cocktail kits (STEMCELL technology, Canada). The hPBMCs were activated with PHA-L (2 µg/mL) (Sigma-Aldrich, MO, USA), and T cells were activated with 100 ng/mL of anti-human CD3 and anti-human CD28 antibodies (PeproTech, NJ, USA) for 48 hr.
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8

Mitochondrial Respiration Profiling Protocol

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Recombinant IL-22 proteins were obtained from Novoprotein, China; oligomycin, cyanide p-trifluoromethoxyphenyl-hydrazone (FCCP) and rotenone were purchased from Seahorse Biosciences, USA; 2-Deoxy-D-glucose, glucose, palmitic acid (Palm.), rapamycin were purchased from Sigma-Aldrich, USA; dorsomorphin, LY294002, cisplatin (Cisp.), 5,5′,6,6′-tetrachloro-1,1′,3,3′-tetraethylbenzimidazolylcarbocyanine iodide (JC-1), TRNzol reagent, MitoTracker Green, SYBR Green qPCR mix, MMLV reverse transcriptase were provided by Beyotime Biotechnology, China; ethanol (Eth.), carbon tetrachloride (CCl 4 ) were obtained from Sinopharm, China; MitoTracker Red, Hoechst33342, PKH26, MitoSOX were purchased from Invitrogen, USA.
Collagenase IV was obtained from Yeasen, China. Percoll was purchased from GE, USA. Antibodies targeting AKT, p-AKT (S473), mTOR, p-mTOR (S2248), p-STAT3 (Y705), p-PI3K (Tyr199), p-p70S6K, HK-2, c-Myc, Bad, Bcl-2 were obtained from Cell Signaling Technology, USA; Antibodies for Glu1, AMPK, p-AMPKα, IL-22R1, β-Actin and GAPDH were provided by Abcam, USA.
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