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3 protocols using importin β

1

Comprehensive Antibody Panel for DNA Damage Response

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We used the following rabbit antibodies: TOPBP1 (ab2402; Abcam), RAD51 (sc8349; Santa Cruz; ab63801; Abcam), pRAD51 S14 (Yata et al., 2012 (link)), cyclin A (NCL-CYCLINA; Leica), RPA70 (ab79398; Abcam), pRPA32 T21 (ab61065; Abcam), pRPA32 S4/8 (A300-245A; Bethyl), pRPA32 S33 (NB100-544; Novus), pCHK1 S317 (2344; Cell Signaling), pCHK2 T68 (2661; Cell Signaling), H3 (ab1791; Abcam), pH3 S10 (06–570; Millipore), BACH1 (sc-28738; Santa Cruz), pPTEN S380 (9551; Cell Signaling), pLRRK1 S1790 (H. Hanafusa, Nagoya University, Nagoya, Japan; Hanafusa et al., 2015 (link)); mouse antibodies: γH2AX (05–636; Millipore), cyclin A (sc-751; Santa Cruz), BrdU (RPN20AB; AP Biotech), RPA32 (ab2175; Abcam), BRCA1 (sc-6954; Santa Cruz), BRCA2 (OP95; Millipore), CHK1 (sc-8408; Santa Cruz), Importin-β (ab2811; Abcam), Lamin A/C (sc-7292; Santa Cruz), α-tubulin (sc-8035; Santa Cruz), PLK1 (05–844; Millipore; 331700; Zymed); and goat antibody: γ-tubulin (sc-7396; Santa Cruz).
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2

Multiparametric Characterization of Stem Cells

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Cells were fixed with 4% paraformaldehyde. Permeabilization was performed with 0.5% Triton X-100 and blocking with 10% bovine serum albumin (Sigma). Primary antibodies included antibodies against CD44 (1:400; Proteintech), OCT4 (1:500; Santa Cruz), SOX2 (1:500; Chemicon), TRA-1-80 (1:200; Abcam), Importin β (1:1000; Abcam), Transportin 1 (1:200; Abcam). Secondary antibodies were Alexa Fluor® 488/594 goat anti-rabbit/mouse IgGs (1:500; Origene). Counter staining was performed with Hoechst 33342. Images were captured and analyzed with TCSSP8 Confocal Microscope (Leica).
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3

Evaluating Inflammatory Signaling Pathways

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Human thrombin was obtained from Enzyme Research Laboratories (South Bend, IN). Polyclonal antibodies to ICAM-1, VCAM-1, RelA/p65, β-actin, and IκBα were from Santa Cruz Biotechnology (Santa Cruz, CA). Phospho-(Ser536)-RelA/p65, was obtained from Cell Signaling (Beverly, MA). Importin α, importin β and TATA Binding Protein (TBP) antibody was purchased from Abcam (Cambridge, MA). NF-κB (p65) transcription factor assay kit was purchased from Cayman Chemical (Ann Arbor, MI). All other materials including Alexa Fluor 488-phalloidin were from Thermo Fisher Scientific (Waltham, MA).
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