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14 protocols using i view dab universal kit

1

Automated Immunohistochemistry Protocol

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Automated immunohistochemistry was performed using the VENTANA BenchMark GX (Ventana Medical Systems Inc., Tucson, AZ, USA). Deparaffinization, peroxidase inhibition, and antigen retrieval was performed (CC1: 1 mM Ethylenediaminetetraacide acid (EDTA), pH 8.5). According to the manufacturer's protocol, the slides were stained with the primary Ab overnight at 4°C and counterstained. Primary Abs included rat anti‐mouse CCR2 Ab (clone FAB538A, R&D Systems), rabbit anti‐mouse CD11b (GTX134542, GenTex), rabbit anti‐mouse/human F4/80 (PA5‐32399), goat anti‐rabbit IL17A (Abcam, Cambridge, UK, cat no. ab79056), rabbit anti‐mouse CD8e (cat no. 550281, BD Pharmingen), and rabbit anti‐mouse/human/rat CD3 (clone 5690, abcam). Secondary antibodies included rabbit anti‐rat IgG (for CCR2 and F4/80) and goat anti‐rabbit (for CD11b, CD8a, CD3). Slides were developed using the iView DAB universal Kit (code 100032, Ventana Medical Systems Inc.) or ultraView Universal Alkaline Phosphatase Red Detection Kit (#760‐501, Ventana Medical Systems Inc.).
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2

Immunohistochemical Analysis of CD204

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Immunohistochemical analysis of CD204 was performed using a mouse monoclonal antibody against human CD204 (clone SRA-E5, 1 : 500; Transgenic, Kumamoto, Japan) according to the standard technique for a Ventana Benchmark XT Autostainer (Ventana Medical Systems, Tucson, AZ, USA). Antigen retrieval was carried out using Cell Conditioning Solution (CC1-Tris-based EDTA buffer, PH 8.0; Ventana Medical Systems). Visualization was achieved using the I-VIEW DAB Universal Kit (Ventana Medical Systems) and hematoxylin counterstaining [20 (link)].
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3

Immunohistochemical Analysis of UMOD in Kidney Tissue

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Kidney tissue was embedded with 50% OCT for 10 h at room temperature and cut into ~5 µm thick sections. The sections were fixed in 4% paraformaldehyde solution for 15 min at room temperature and washed 3 times with PBS before being incubated in 0.4% pepsin for 30 min at 37°C for antigen retrieval and then blocked in 3% BSA for 30 min at room temperature. Immunohistochemical analysis of UMOD was performed using a mouse monoclonal antibody against human UMOD (1:300, cat. no. ab207170, Abcam) at 4°C overnight, goat anti-mouse IgG was used as secondary antibody (1:500, cat. no. Ab150113, Abcam) at 37°C for 0.5 h. I–VIEW DAB Universal Kit (Ventana Medical Systems, Inc.) was used for color reaction, after the termination of color development, hematoxylin was used for nuclear counterstain and observations were made under light microscopy at 400× magnification.
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4

HA Staining of MIA PaCa-2 Cells

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Chamber slides were used for staining cells (Thermo Fisher Scientific, Inc., Waltham, MA, USA). Medium (1 ml) containing 1×104 MIA PaCa-2 cells was added to the chamber slides. Following 24-h incubation, 0.1–1.0 mM MU dissolved in dimethyl sulfoxide (DMSO; Wako Pure Chemicals Industries, Ltd.) was added, ensuring that the concentration of DMSO in the medium did not exceed 0.1%. Upon 48-h incubation, cells were washed twice with PBS (2 ml/wash), fixed with 4% paraformaldehyde buffered with PBS at room temperature for 2 h and rinsed twice with PBS. Following antigen retrieval, tissue samples were incubated for 32 min at 37°C with 2.5 µg/ml biotinylated HA binding protein (HABP; catalog no., BC41; Hokudo Co., Ltd., Osaka, Japan). Streptavidin horseradish peroxidase conjugate and 3,3-diaminobenzidine (DAB) from the iVIEW DAB universal kit (Ventana Medical Systems, Inc., Tucson, AZ, USA) was used to visualize the results. Negative controls were stained with HABP following digestion of the tissue sections with 3.0 U/ml Streptomyces hyalurolyticus hyaluronidase (26 (link)).
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5

Immunohistochemical Analysis of Podoplanin Expression

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Paraffin sections of 4-µm thickness were immunostained with the AE1/3 antibody (PCK26, cocktail antibody, Ventana; Roche Tissue Diagnostics Japan; cat. no. 760-2595) and the podoplanin antibody (clone D2-40, Dako Agilent Technologies, Inc.; cat. no. M3619), respectively, using an automated immunostainer (VENTANA BenchMark ULTRA system; Ventana Medical Systems, Inc.) according to the manufacturers' protocol. The incubation with secondary antibodies and detection were carried out using the I–VIEW DAB Universal kit (Ventana Medical Systems, Inc.; cat. no. 760-041) and Endogenous Biotin Blocking kit (Ventana Medical Systems, Inc.; cat. no. 760-050).
Podoplanin expression in budding cells, which was confirmed by AE1/3 expression, was evaluated independently by the same authors mentioned above (HM and NK). The results were scored from 0 to 3 based on the intensity of the staining at the membrane or in the cytoplasm: 0, no reactivity; +1, weak; +2, moderate; and 3, marked, that is, overexpression (Fig. 2). For analysis, the results were divided into 2 groups: negative (score 0) and positive (from +1 to +3). The ly of the tumor tissue was evaluated using hematoxylin and eosin staining or podoplanin staining for detecting lymphatic vessels (negative; positive).
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6

Histological Characterization of Engrafted Tumors

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The engrafted tumors were fixed with 10% phosphate-buffered formalin, and paraffin-embedded sections were stained using hematoxylin and eosin. Anti-human vimentin (Clone V9; #M0725; Dako, Glostrup, Denmark) and anti-human pancytokeratin (AE1/AE3; #M3515; Dako) antibodies were used for the confirmation of human cell-derived tumors. A staining without primary antibodies was also prepared as a control for nonspecific effects of primary antibodies. Secondary antibodies (I-VIEW DAB Universal Kit, #518100032) were purchased from Roche Diagnostics KK (Tokyo, Japan).
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7

Comprehensive Immunohistochemical Profiling of PPGL

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Tumor tissues were fixed using 10% buffered formalin. Serial 10-μm-thick sections were prepared from formalin-fixed, paraffin-embedded (FFPE) tissues. Sections were stained with Hematoxylin and Eosin and reviewed by a pathologist to determine the tumor location. Immunohistochemistry of chromogranin-A (CgA), CD56, neuron-specific enolase (NSE), synaptophysin (SYN), neurofilament, and S-100 was used for the routine diagnosis of PPGL. In addition, Fontana-Masson stain was used to detect the accumulation of melanin. To detect TH, DDC, DBH, PNMT, and succinate dehydrogenase complex, subunit B (SDHB) protein expression, the sections were incubated with anti-TH, DDC, DBH, PNMT, and SDHB antibody, respectively, at 4°C overnight after blocking with Protein Block Serum-Free (DAKO, Tokyo, Japan) with partial reference to previous articles (9 (link)). The details of each antibody are described in Supplementary material 1. Subsequently, the Ventana BenchiMark ULTRA fully automated immunostaining system (Roche Diagnostics, Basel, Switzerland) was used with the I-VIEWDAB universal kit (Roche Diagnostics) containing secondary antibodies (biotinylated mouse anti-goat IgG antibody, biotinylated mouse anti-goat IgM antibody, and biotinylated rabbit anti-goat IgG antibody), avidin-horseradish peroxidase, and 3,3′-diaminobenzidine.
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8

Immunohistochemical Analysis of Bile Duct Carcinoma

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For histological examination, extrahepatic bile duct carcinoma specimens were routinely fixed with formalin, embedded in paraffin, sectioned to a thickness of 4-µm, and mounted on saline-coated glass slides. Immunohistochemical examination was performed on deparaffinized sections using the standard avidin-biotin-peroxidase complex method with a BenchMark XT automated immunostainer (Ventana Medical Systems, Inc., Tucson, AZ, USA). The different phenotypes were investigated for mucin (MUC) expression using primary antibodies against MUC1 (#NCL-MUC-1, dilution, 1:50; clone Ma696), MUC2 (#NCL-MUC-2, dilution, 1:50; clone Ccp), MUC5AC (#NCL-MUC-5AC, dilution, 1:100; clone CLH2) and MUC6 (#NCL-MUC-6, dilution, 1:100; clone CLH5), all purchased from Novocastra (Leica Biosystems, Newcastle, UK). After washing in PBS three times, secondary immunostaining was performed with an i-VIEW DAB Universal Kit (Roche Diagnostics, Tokyo, Japan) for 28 min at 42°C.
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9

Immunohistochemical Detection of p-Tau

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We pretreated all samples with formic acid. The following primary antibodies were used: a mouse monoclonal anti-p-tau antibody (1:100 dilution, Innogenetics, Ghent, Belgium). The signals from monoclonal and polyclonal antibodies were detected by using the automatic system on a VENTANA NX20 with the I-View DAB Universal Kit (Roche, Basel, Switzerland) according to the manufacturer’s instructions. Sections were counter-stained with hematoxylin.
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10

IHC Protocol for HER-2/neu Antibody

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IHC for PATHWAY anti-HER-2/neu (4B5) Rabbit Monoclonal Primary Antibody (ready to use, Catalog# 790–2991; Roche Diagnostics, Tucson, AZ, USA) was performed on the TMA sections by Ventana BenchMark GX using iView DAB universal kit (Catalog# 760–041; Roche Diagnostics). The iView DAB universal kit was used because it has no difference in sensitivity from the Ultra-View DAB universal kit and is routinely used by inspection companies. IHCs without primary antibodies were performed as negative controls.
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