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5 aminoimidazole 4 carboxamide ribonucleotide aicar

Manufactured by Merck Group
Sourced in United States

5-aminoimidazole-4-carboxamide ribonucleotide (AICAR) is a synthetic compound that is used as a tool in biochemical and cell biology research. It is an adenosine monophosphate-activated protein kinase (AMPK) activator, which plays a role in cellular energy homeostasis. AICAR can be used to study the effects of AMPK activation on various cellular processes.

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14 protocols using 5 aminoimidazole 4 carboxamide ribonucleotide aicar

1

Monoclonal Antibodies for AMPK and TGF-β Signaling

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Monoclonal antibodies against p-AMPKα (Thr172), total AMPK α, p-Smad1/5 and total-Smad1 or 5 were purchased from the Cell Signaling Technologies Company (Beverly, MA). Metformin, LDN212854, 5-Aminoimidazole-4-carboxamide ribonucleotide (AICAR), and monoclonal antibodies for β-actin and flag were from Sigma (St Louis, MO). Antibodies for ALK1 and TGF-β were from Abcam (Cambridge, MA). Recombinant mouse BMP9 was from Biolegend (San Diego, CA). Growth factor-reduced Matrigel and antibody against CD-31 was from BD Biosciences (San Jose, CA). Optimal cutting temperature medium (OCT) was from Sakura Finetek USA Inc (Torrance, CA). DyLight 594 labeled Griffonia Simplicifolia Lectin (GSLI)isolectin B4 (Dy594-lectin) and FITC-lectin were from Vector Labs (Burlingame, CA). Ketamine hydrochloride and xylazine were from Phoenix Pharmaceutical, Inc (St. Joseph, MO). Phenylephrine and tropicamide were from Alcon (Humacao, Puerto Rico).
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2

AICAR Enhances Glucose Uptake in Cells

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Trypsin solutions, Dulbecco’s Modified Eagle’s Medium (DMEM), fetal bovine serum (FBS), antibiotic/antimycotic, and horse serum were purchased from GIBCO Life Technologies (Gaithersburg, MD, USA). We obtained 5-aminoimidazole-4-carboxamide ribonucleotide (AICAR) and Dimethyl sulfoxide (DMSO) from Sigma-Aldrich Chemical Co. (St. Louis, MO, USA). We used a Mem-PER Plus Membrane Protein Extraction Kit and 2-(N-[7-nitrobenz-2-oxa-1,3-diazol-4-yl] Amino)-2-deoxyglucose (2-NBDG) from Thermo (Sunnyvale, CA, USA). Protease inhibitor cocktail, phosphatase inhibitor cocktail, Compound C, and STO-609 were obtained from Sellbeck chemicals (Houston, TX, USA). Our siRNA was purchased from Shanghai GenePharma company (Shanghai, China). We utilized antibodies against phospho-AKT (Ser473), AMPKα (Thr172), phospho-AKT (Thr308), phospho-AS160 (Ser588), phospho-p38 MAPK (Thr180/Tyr182), phospho-ACC (Ser79), phosphoinositide 3-kinase (PI3K, P110β), AS160, AMPKα, and ACC from Cell Signaling Technology (Danvers, MA, USA); AKT, ATP1A1, p38 MAPK, and β-actin from Proteintech (Wuhan, China); and GLUT4 from Abcam (Cambridge, UK). Secondary antibodies and insulin were sourced from Yeasen Biotech (Shanghai, China). A glucose assay kit was procured from Shanghai Kexin Biotechnology Research Institute (Shanghai, China).
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3

Tenocyte Modulation by Palmitate and DEL-1

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Human tenocytes (ZenBio, USA) were cultured with tenocyte culture medium (ZenBio) supplemented with 10% fetal bovine serum (FBS) (HyClone, USA) and 1% antibiotics (100 IU/ml penicillin and 100 mg/ml streptomycin) (HyClone) at 37°C in a humidified atmosphere containing 5% CO2. The cells were cultured on collagen type I-coated (Sigma-Aldrich, USA) culture plates and rinsed with phosphate-buffered saline (PBS). Tenocytes were subcultured when they reached approximately 90 to 95% confluence. Tenocytes at passages 4 or 5 were used and confirmed to be free of contamination with mycoplasma. Sodium palmitate (Sigma-Aldrich) was conjugated with 5% bovine serum albumin (fatty acid-free grade; Sigma-Aldrich). Human recombinant DEL-1 (Abcam, USA) was reconstituted in PBS. Tenocytes were treated with bovine serum albumin (BSA)-conjugated palmitate (400 μM), DEL-1 (0 to 2 μg/ml), 3-methyladenine (3-MA) (0.5 mM) (Sigma-Aldrich), and/or 5-aminoimidazole-4-carboxamide ribonucleotide (AICAR) (0.1 mM) (Sigma-Aldrich) at the same time for 24 hours. BSA was used as a vehicle control.
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4

Metformin Regulation of TRPA1 in Bladder Cells

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In vitro cell experiments were carried out in Primaria plates (BD Falcon) for uroepithelial cells, TERT-NHUC, and polystyrene (Costar) for 5637 and THP1 differentiated cells. Nearly confluent cells, 70–80%, were treated with freshly prepared metformin (4 mM, Sigma-Aldrich) for 24 h, deionized water served as vehicle control. 4 mM metformin concentration was found to be optimal for both the cell lines based on the dose response expression profiles of CAMP and RNASE7 expression (Fig. S1).
5' adenosine monophosphate-activated protein kinase (AMPK) activator 5-Aminoimidazole-4-carboxamide ribonucleotide (AICAR, 1 mM, Sigma-Aldrich) or AMPK inhibitor, Compound C (20 µM, Sigma-Aldrich) were used and cells were treated for 24 h. In blocking experiments, Compound C was added 1 h prior to adding AICAR or metformin. Chinese hamster ovary cell line expressed growth/differentiation factor 15 peptide (GDF15, 50 ng/ml, R&D systems) was treated to the cells for 24 h. For TRPA1 RT-PCR or imaging experiments, cells were stimulated with the activator, allyl isothiocyanate (AITC, 10 µM, Sigma-Aldrich) and inhibitor A-967079 (A96, 20 µM, Sigma-Aldrich), for 24 h for mRNA analysis. Equal amount of DMSO served as vehicle in control cells.
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5

Cigarette Smoke Exposure Effects on Airway Cells

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Human bronchial epithelial cells BEAS-2B cells (Sigma) were cultured in Dulbecco's modified Eagle's medium (DMEM) supplemented with 10% heat-inactivated fetal bovine serum (FBS), 2 mM L-glutamine, penicillin (100 U/ml), and streptomycin (100 U/ml) in 5% CO2 and humid air at 37°C. Human small airway epithelial cells SAECs (Lonza) were maintained in Small Airway Epithelial Cell Growth Medium (SAGM; basal medium plus growth supplements, Lonza). Cells were used between passage 4 and 10. Cells were exposed to CSE (0.25% for SAECs and 0.5% for BEAS-2B based on their viability) for 24 hours in the presence or absence of 5-Aminoimidazole-4-carboxamide ribonucleotide (AICAR, 1 mM, Sigma) and Compound C (5 μM, Sigma).
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6

Palmitate-induced Metabolic Dysfunction in NIT-1 Cells

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NIT-1 cells were purchased from ATCC (Cat# CRL-2055, RRID: CVCL_3561; Manassas, VA, USA) and cultured in RPMI 1640 medium (Gibco Life Technologies, Carlsbad, CA, USA) supplemented with 10% (v/v) fetal bovine serum (FBS; Gibco Life Technologies), 100 U/mL penicillin, and 100 µg/mL streptomycin. Palmitate was dissolved at 100 mM in ethanol to make stock solution. Palmitate stock solution was incubated at 37℃ for an hour and diluted in the culture medium to which fatty acid-free bovine serum albumin (BSA) had been added in a 1:3 molar ratio, to prepare BSA-conjugated palmitate. Cells were incubated with the BSA-conjugated palmitate (0.2 to 0.5 mM) for the indicated time periods. The compounds 1,1-dimethylbiguanide hydrochloride (metformin) and 5-aminoimidazole-4-carboxamide ribonucleotide (AICAR) used as an AMPK agonist as well as compound C as an AMPK antagonist were purchased from Sigma (St. Louis, MO, USA).
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7

Taurine Protection Against Oxidative Stress

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To determine whether taurine could protect against oxidative stress-induced cell death in osteocyte-like cells, MLO-Y4 cells were seeded at a density of 1×104 cells/cm2 on a collagen-coated 96 well plate in αMEM supplemented with 2.5% fetal bovine serum (FBS), 2.5% calf serum, 100 U/ml penicillin and 50 μg/ml streptomycin (Themo-Fisher, Waltham, MA). Cells were pre-treated with varying concentrations of taurine (1–50 mM) for 24 hours, followed by treatment with 0.3 mM hydrogen peroxide (EMD Millipore, Burlington, MA) for 4 hours to induce approximately 20 % cell death. 100 μM 5-Aminoimidazole-4-carboxamide ribonucleotide (AICAR, Sigma, St Louis, MO), which activates AMPK and protects against cell death, was used as a positive control. Cells were stained with 2 μM ethidium homodimer 1 (Themo-Fisher) for 20 min to detect dead cells. Percentage of cell death was calculated as EthD-1 positive cells divided by the total number of cells stained with 5 μg/mL Hoechst 33342 (Thermo-Fisher) as a nuclear counterstain.
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8

PARP and AMPK Modulation in 3T3-L1 Cells

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3T3-L1 cells were grown until confluent and exposed to various treatments for the experiments described herein. For experiments with PARP inhibitor, the cells were treated with 20 μM BYK204165 (Tocris Bioscience, 1104546–89-5), or DMSO vehicle for 2 hours. For activation of AMPKα, the cells were treated with 500 μM 5-aminoimidazole-4-carboxamide ribonucleotide (AICAR, Sigma, A9978) for 1 hour. For inhibition of AMPKα, the cells were treated with 20 μM Dorsomorphin (Sigma, P5499) for 1 hour. For inhibition of phosphatase, the cells were treated with 1 μM Okadaic acid (Sigma, 459620) for 15 minutes. For inhibition of Ca2+/Calmodulin-dependent protein kinase kinase (CaMKK), the cells were treated with 10 μg/mL STO-609 (Sigma, S1318) for 1 hour. For treatment with 2-deoxy-D-glucose (5 mM; Sigma, D8375), the cells were grown until confluent and treated for 24 hours. For induction of DNA damage, the cells were treated with 2 mM H2O2 for 5 minutes.
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9

Culturing Proximal Tubular Cells

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The human renal proximal tubular epithelial cell line HKC8 was obtained from Dr. L. Rausen (Johns Hopkins University, Baltimore, MD) and was maintained in Dulbecco's Modified Eagle Medium supplemented with Ham's F12 medium (DMEM/F12; Invitrogen). DMEM/F12 was supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin (WelGENE, Daegu, Republic of Korea). Before experiments, cells were maintained in medium containing 5–30 mM D-glucose. To increase PGC1α activity, 1 mM 5-aminoimidazole-4-carboxamide ribonucleotide (AICAR; Sigma-Aldrich St. Louis, MO, USA) or 1 mM metformin (Sigma-Aldrich, St. Louis, MO, USA) was added to the culture media.
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10

Sesn2 Knockdown in H9c2 Cardiomyocytes

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H9c2 cells (Korean Cell Line Bank, Seoul, South Korea) were maintained in Dulbecco's modified Eagle's medium (DMEM) (Invitrogen, Carlsbad, CA, USA) containing 10% (v/v) fetal bovine serum (FBS) (Invitrogen), 50 U/ml penicillin, and 50 g/ml streptomycin (Invitrogen). Cells were propagated at 37°C with 5% CO2 and subcultured in 24-well plates until reaching 90% confluency, after which they were transfected with rat sesn2-targeting siRNA or scrambled siRNA (Genolution, Seoul, South Korea) using Lipofectamine™ according to the user manual (Invitrogen). After 1 day, the efficiency of sesn2 knockdown was determined by Western blotting. LPS (Sigma-Aldrich, MO, USA), 5-aminoimidazole-4-carboxamide ribonucleotide (AICAR) (Sigma-Aldrich), and N-acetyl-cysteine (NAC) (Sigma-Aldrich) were dissolved in phosphate-buffered saline (PBS) (Biosesang, Seoul, Korea) and used to treat the transfected H9c2 cells. All additives were cotreated; cells were not serum starved.
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