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7 protocols using palbociclib

1

Cell-based Assay Compound Preparation

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Palbociclib was obtained from Apexbio (Houston TX). Afatinib, AZD0530, RDEA11, AZD4054 and AZD2014 were obtained from Selleckchem (Houston, TX). Compounds were dissolved in DMSO, before dilution in cell culture media for cell-based assays.
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2

Cell Culture and Primary Neuron Isolation

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All cell lines were cultured at 37 °C in a humidified atmosphere at 5% CO2. U2OS cells were cultured in DMEM (Gibco) supplemented with 10% fetal bovine serum (FBS) and Antibiotic-Antimycotic (Gibco). SH-SY5Y cells were cultured in DMEM+F12 (Gibco) supplemented with 10% FBS and Antibiotic-Antimycotic. When the cell cycle was arrested in G1, Palbociclib (Apexbio) was added into the media. Cell culture media was changed every 3 days.
Primary hippocampal neuronal cultures were prepared as described previously (Seibenhener and Wooten, 2012 ) with some modifications. In brief, timed pregnant C57BL/6 mice (Charles River) were sacrificed, and embryos were collected at embryonic day 18 (E18). Primary hippocampal neurons were isolated from both male and female embryos and pooled. Cells were dissociated with 0.125% trypsin, and plated on 96-well glass-bottom plates coated with poly-D-lysine (Sigma-Aldrich) at a cell density of 60,000/ml in neurobasal medium (Gibco) supplemented with 2% B27 (Sigma-Aldrich) and 0.25% glutamine (Sigma-Aldrich). Thereafter, half of the medium was replaced twice a week. Neurons were used 6 to 8 days after plating.
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3

Comprehensive CDK Inhibitor Protocol

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AT7519 (S1524), flavopiridol (S1230), JNJ-7706621 (S1249), LEE011 (S7440), roscovitine (S1153), and SNS-032 (S1145) were obtained from Selleckchem. AZD-5438 (A8326), CDK4 inhibitor (B1233), CDK9 inhibitor (A3294), CVT-313 (A3336), LDC000067 (B4754), purvalanol B (A8565), palbociclib (A8316), and THZ1 (A8882) were purchased from ApexBio.
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4

Evaluating Synergistic Anticancer Potential

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SK-OV-3 and A2780p cells seeded onto 96-well plates were treated with Palbociclib (Selleckchem, Houston, TX, USA), Abemaciclib (Selleckchem), Navitoclax (APExBio, Houston, TX, USA) and Venetoclax (APExBio, Houston, TX, USA) in a range of 0.01 to 25 µM or the combination of Palbociclib and Navitoclax. After five days, cells were fixed and stained with crystal violet. Combination index analysis was determined by the Chou–Talalay method using the Compusyn Software (1.0, ComboSyn Inc., Paramus, NJ, USA). For tumor patient-derived spheroids, spheres were incubated with the indicated drugs and their viability was assessed by MTS assay and immunoblot after 96 h.
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5

Senescence Induction in Cell Lines

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MCF7 cells were treated with different concentrations (100 nM, 200 nM, 500 nM or 1000 nM) of Palbociclib (PD0332991) (APExBIO), Abemaciclib (LY2835219) (Selleckchem) or Ribociclib (LEE011) (Selleckchem) and the other cancer cell lines with the indicated concentration of inhibitor. Media was changed every 2 days. Human primary fibroblasts (HFFF2) were treated with 50μM of Etoposide (Sigma-Aldrich) for 2 days and cells collected at day 7 or treated with 1μM Palbociclib for 7 days. HFFF2 expressing pLNC-ER:RAS vector, were induced to senescence by adding 200 nM 4-hydroxytamoxifen (4OHT) (Sigma-Aldrich) for 6 days. All treatments were done using DMEM supplemented with 10% FBS and 1% of antibiotic-anti-mycotic. HUVEC cells were treated with 500 nM Palbo for 7 days to induce senescence.
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6

Prostate Cancer Cell Line Characterization

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LNCaP, HEK293T, VCaP, and PC-3 cells were obtained from the American Type Culture Collection (ATCC). C4-2 cells were purchased from Uro Corporation. LNCaP-RF cells were described previously (14 (link)). HEK293T cells were maintained in Dulbecco’s modified eagle’s medium (DMEM) supplemented with 10% fetal bovine serum (FBS). VCaP cells were maintained in DMEM supplemented with 13% FBS. C4-2, LNCaP, LNCaP-RF, and PC-3 cells were maintained in RPMI 1640 medium supplemented with 10% FBS. All cell lines were authenticated (karyotyping, mutations in p53 and ERG fusions, and AR, PTEN, p53, and ERG protein expression) and used within 6 months of thawing. No mycoplasma contamination was detected in these cell lines by testing with the Lookout Mycoplasma PCR Detection Kit (Sigma-Aldrich). Charcoal-stripped serum (CSS) was purchased from Thermo Fisher Scientific-Gibco (#12676029). Enzalutamide was kindly provided by Medivation. LNCaP-RF cells were treated with 10 μM of enzalutamide for 72 hours unless otherwise noted. Palbociclib (PD-0330991) was obtained from ApexBio. LNCaP-RF cells were treated with 1 μM of Palbociclib for 72 hours unless otherwise noted. For combination treatment, LNCaP-RF cells were treated with 10 μM enzalutamide and 1 μM Palbociclib for 72 hours.
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7

Evaluation of Small Molecule Inhibitors

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The drugs employed in this study were as follows: dabrafenib (ApexBio, B1407‐50); XL888 (ApexBio, A4388‐25); fludarabine (Selleckchem, S1491); CHIR‐99021 HCl (CT99021) (Selleckchem, S2924); palbociclib (ApexBio, A8316); LDC000067 (ApexBio, B4754‐10); Ro 3306 (ApexBio, A8885‐10); roscovitine (ApexBio, A1723‐10); K03861 (Selleckchem, S8100); CHIR‐99021 (Selleckchem, S2924); dinaciclib (Selleckchem, S2768); FRAX597 (Selleckchem, S7271); PF‐3758309 (Selleckchem, S7094); AUY922 (Selleckchem, S1069); BIIB021 (Selleckchem, S1175); novobiocin (Selleckchem, S2492); 17‐DMAG (Selleckchem, S1142). All the drugs were dissolved in DMSO (Sigma D2650).
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