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10 protocols using lv con

1

Overexpression and Knockdown of DEC1 in DLD-1 Cells

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For DEC1 overexpression, DLD-1 cells were seeded in a 6-well plate at the density of 1 × 106 cells/well and then transfected by GenJet TM in vitro DNA Transfection Reagent II (SignaGen, Maryland, USA;Cat:SL100489). The transfection mixtures contained 1 μg Flag-CMV2 vector or Flag-DEC1 plasmid. The transfection medium was replaced with the regular medium 6 h thereafter. The transfected cells were used for subsequent experiments as described below.
For DEC1 knockdown experiment, DLD-1 cells were lentivirally transduced to LV-CON or LV-DEC1-RNAi (Genechem, Shanghai, China). After 48 h, cells were cultured in media containing 5 μg/ml of puromycin to select the stable cells for two weeks. For DEC1 sg-RNA/cas9 experiment, DLD-1 cells were transfected with vector control or lentivirus encoding sgDEC1/cas9 (Genechem, Shanghai, China). Later, cells were cultured in media containing puromycin (5 µg/mL) for two weeks. The cells were designated as sg-CON (control, polyclonal cells) and sg-DEC1 (sg-DEC1/cas9, polyclonal cells) in this study, respectively.
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2

TTC-Based Apoptosis Analysis Workflow

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HE (Nanjing Spring & Autumn Biological Engineering Co. Ltd) with a purity greater than 98% was dissolved in 2% dimethyl sulfoxide (DMSO) to generate stock solutions. 2,3,5- triphenyltetrazolium chloride (TTC) was purchased from Sigma-Aldrich; rabbit beta-actin polyclonal antibody, rabbit anti-Bcl-2, and rabbit anti-Bax were purchased from Bioworld Technology Inc. (St. Louis Park, MN, USA). Rabbit beta-IKK polyclonal antibody were purchased from Cell Signalling Technology; RIPA lysis buffer was purchased from Millipore (Billerica, MA, USA). A BCA Protein Assay Kit was purchased from Thermo-Fisher Scientific (MA, USA); anti-beta-tubulin, anti-NF-κB (p-p65), anti-SAPK/JNK, anti-phospho-SAPK/JNK, and goat anti-rabbit secondary antibody were purchased from Cell Signaling Technology. Goat anti-Iba-1 was purchased from Abcam (1:500); Trizol was purchased from Invitrogen (USA). A PrimeScript RT reagent kit was purchased from Takara (Dalian, China); Lv-MLK3 and Lv-con were purchased from GeneChem (Shanghai China). A SYBR green Kit was purchased from Applied Biosystems (Foster City, CA, USA) and the ECL chemiluminescence system was purchased from Thermo Company (Rockford, IL, USA).
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3

Hypoxia-Induced Angiogenesis and Metastasis

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Dulbecco’s modified Eagle’s medium (DMEM) and penicillin/streptomycin were purchased from Hyclone (Logan, USA). Foetal bovine serum (FBS) was purchased from Gibco (South America). Anti-HIF1α monoclonal antibodies were purchased from CST (Boston, USA). Anti-VEGF monoclonal antibodies were purchased from RD (Minneapolis, USA). Horseradish peroxidase (HRP)-conjugated secondary antibodies, New Super ECL Assay kit, and anti-β-actin antibodies were purchased from KeyGEN BioTECH (Nanjing, China). Transwell chambers and Matrigel were purchased from Corning Life Sciences (8-μm pores, Tewksbury, MA, USA) and BD Biosciences (San Jose, CA, USA), respectively. The QRT-PCR kit was purchased from Takara (Shiga, Japan). The Cell Counting kit-8 (CCK-8) assay was purchased from Dojindo Molecular Technologies, Inc. The BCA Protein Assay Kit was purchased from Beyotime Biotechnology (Shanghai, China). Recombinant lentiviral expression vectors (LV-HIF1α, LV-Con, LV-ShHIF1α, and LV-Scramble), and polybrene were obtained from Genechem (Shanghai, China). BALB/c nude mice were purchased from Shanghai Jiesijie Experimental Animal Co., Ltd (Shanghai, China).
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4

Lentiviral Vectors for miR-29a-3p and Robo1 Modulation

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Lentivirus (LV)-miR-29a-3p, LV-negative control (NC), miR-29a-3p-Sponge,
LV-Sponge, LV-Robo1, LV-Con, LV-short hairpin RNA (sh)-Robo1, LV-shCon,
LV-sh-NC, and LV-shLINC00473 were purchased from Shanghai Genechem Co., Ltd.
(Shanghai, China). Lentivirus overexpression vector was LV5 [EF-1a promoter,
conjugated with green fluorescent protein (GFP)], and lentivirus shRNA vector
with pGLVH1 (cytomegalovirus promoter, conjugated with GFP) (Shanghai Genechem
Co., Ltd., Shanghai, China). LV-miR-29a-3p, LV-NC, LV-Robo1 and LV-Con were
transduced into LV5, while LV-Sponge, miR-29a-3p-Sponge, LV-sh Robo1, LV-shCon,
LV-sh-NC, and LV-shLINC00473 were transduced into pGLVH1.
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5

Lentiviral vector construction and cell transduction

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Lentiviral vector encoding human firefly luciferase, KIFC1, gankyrin and miR-532-3p genes (LV-KIFC1, LV-Gank and LV-miR-532-3p), short hairpin RNAs against KIFC1 and gankyrin (LV-shKIFC1 and LV-shGank) and the empty vector (LV-Con and LV-shCon) were purchased from GeneChem (Shanghai, China). The stable cells were transduced in polybrene, generated and harvested after puromycin selecting for 14 days. Sequences of the specific short interfering RNAs were shown in Supplementary Table 3. Detailed information of our commercial antibodies are described in Supplementary Table 4.
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6

Targeted Silencing of PKG2 in Osteoblasts

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Targeted small interfering RNA (siRNA) was designed to knock down PKG2 gene expression by Genepharma (Shanghai, China). Osteoblasts were transfected using Micropoly-transfecter (Jiangsu, China), and knockdown efficiency was detected by total RNAs and proteins, which were extracted at 48 h or 72 h after transfection.
For overexpression, lentivirus packaging osteoblasts were transfected with LV-Prkg2 and LV-Con purchased from Genechem (Shanghai, China). After infection, cells were stably selected with puromycin (Solarbio, China).
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7

Astrocyte Transduction with Cx43 Lentivirus

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A lentiviral vector overexpressing Cx43 (Lv-Cx43) and a negative control vector (Lv-con) were purchased from Genechem (Shanghai, China). Astrocytes were cultured and incubated with the lentiviruses. After 24 h, the fresh medium was replaced to remove the excessive transfection complex. The cells from each experimental condition were harvested after 72 h of subculture and used for subsequent experiments.
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8

COMMD3 Regulates Angiogenesis and Tumor Growth

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Dulbecco's modified Eagle's medium (DMEM) and penicillin/streptomycin were purchased from Hyclone (Logan, USA). Foetal bovine serum (FBS) was purchased from Gibco (South America). Anti-COMMD3 polyclonal antibodies and anti-CD34 monoclonal antibodies were purchased from Bioss (Boston, USA). Anti-HIF1α monoclonal antibodies and GAPDH monoclonal antibodies were purchased from CST (Boston, USA). Anti-VEGF monoclonal antibodies were purchased from RD (Minneapolis, USA). Horseradish peroxidase (HRP)-conjugated secondary antibodies, New Super ECL Assay kit, and anti-β-actin monoantibodies were purchased from KeyGEN BioTECH (Nanjing, China). Transwell chambers and Matrigel were purchased from Corning Life Sciences (8-μm pores, Tewksbury, MA, USA) and BD Biosciences (San Jose, CA, USA), respectively. The qRT-PCR kit was purchased from Takara (Shiga, Japan). The BCA Protein Assay Kit was purchased from Beyotime Biotechnology (Shanghai, China). The recombinant lentiviral expression vectors (LV-Con and LV-ShCOMMD3), and polybrene were purchased from Genechem (Shanghai, China). BALB/c nude mice were purchased from Shanghai SLAC Experimental Animal Co., Ltd (Shanghai, China).
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9

Lentiviral Modulation of SFRP1 and PTGS2

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Human LV-CON, LV-SFRP1, LV-SFRP1-RNAi, LV-PTGS2 and LV-PTGS2-RNAi were purchased from Genechem (Shanghai, China). Then, the hPTMSCs and A549 cells were infected with LV-CON, LV-SFRP1, LV-SFRP1-RNAi, LV-PTGS2 and LV-PTGS2-RNAi, repectively. SFRP1-targeting small hairpin RNA (shRNA) (ACCTTTCAGTCCGTGTTTA) and PTGS2-targeting shRNA (TGAATTTAACACCCTCTAT) were cloned into the GV Lentivirus plasmid (Genechem, China). The scramble sequence (TTCTCCGAACGTGTCACGT) of LV-CON was a control, nonspeci c shRNA that does not complement any human gene and is not toxic to cultured human cells.
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10

Lentiviral-mediated Klotho overexpression in T-cell lymphoma

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Cell lines. Jurkat and Molt-3 (T-cell acute lymphocytic leukemia cell lines) were available from Typical Culture Preservation Commission Cell Bank (Chinese Academic of Science, Shanghai, China). MyLa 3676 (cutaneous T-cell lymphoma, lymphoblast, Sezary syndrome) was retained by our laboratory. Karpas 299 (ALK + ALCL cell line) was obtained from Shanghai Bioleaf Biotech Co., Ltd. All the above cell lines were maintained in PRMI-1640 (Gibco, Life Technologies, Rockville, MD, USA) containing 10% fetal bovine serum (FBS; Gibco, Life Technologies) and 1% penicillin/streptomycin mixture.
Cell transfection. Lentivirus vectors either encoding Klotho (LV-KL) or an empty lentiviral vector (LV-Con) were generated by GeneChem (Shanghai, China). Lentivirus transfection of T-cell lymphoma cells were performed according to the manufacturer's instructions. Infection efficiencies were assessed by green fluorescent protein (GFP) fluorescence through flow cytometry. The stably transfected cells were selected with 5 µg/ml puromycin (Sigma-Aldrich, USA).
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