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Cfx96 touch real time quantitative pcr system

Manufactured by Bio-Rad

The CFX96 Touch Real-Time Quantitative PCR system is a laboratory instrument designed for real-time PCR analysis. It is capable of performing quantitative polymerase chain reaction (qPCR) experiments to detect and quantify specific DNA or RNA sequences.

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2 protocols using cfx96 touch real time quantitative pcr system

1

Quantitative PCR analysis of gene expression

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PrimeScript™ RT Master Mix (TAKARA) was used to extract the total RNA (0.5 ​μl) of CTRL, NOR, TF and SF group samples and convert it to cDNA with a total capacity of 10 ​μl. Quantitative PCR was performed using the BioRad CFX96 Touch Real-Time Quantitative PCR system. The final reaction volume was 25 ​μl, and each sample used a 2 ​μl cDNA template. GAPDH acted as an internal control. The reaction was repeated 3 times, with at least 3 independent runs. Data analysis was performed using the ΔΔCt method Bio-Rad Ranking Manager 3.1. Primer sequences are shown in Table 1.

Primer sequences used for the validation amongst upregulated genes.

Table 1
NameDirection5’→3′
COL1A1ForwardGCTCCTCTTAGGGGCCACT
ReverseATTGGGGACCCTTAGGCCAT
RUNX2ForwardGACTGTGGTTACCGTCATGGC
ReverseACTTGGTTTTTCATAACAGCGGA
GAPDHForwardAATGGATTTGGACGCATTGGT
ReverseTTTGCACTGGTACGTGTTGAT
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2

Thermal Stability Assay for Protein Mutants

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To determine the protein stability and to compare the various mutants, a heat denaturation analysis was carried out using a CFX96 Touch real time quantitative PCR system (Bio-Rad) [28] (link).
Protein stability measurements were performed in a buffer containing 20 mm Tris, pH 8.0, 250 mm NaCl, 5% glycerol (v/v), and 5 mm β-mercaptoethanol. The 25 μl of reaction mix contained 5 μm protein and SYPRO Orange (Invitrogen). Heat denaturing curves were observed within the temperature range of 37-85 °C, at a ramp rate of 1.8 °C/min, collecting data every 10 s. The data obtained was normalized using GraphPad Prism software.
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