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438 protocols using bz x800

1

Caspase-3/7 Activity Visualization

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HTR8/SVneo control and YB-1 downregulated cells were plated in 24-well plate at a density of 20,000 cells per well and incubated for 48 h under standard cell culture conditions. The caspase activity was studied using CellEvent™ Caspase-3/7detection reagent (Invitrogen, Eugene, OR, USA). After 30 min of incubation, fluorescence was observed using fluorescent microscope (KEYENCE BZ-X800, Osaka, Japan), coupled with a confocal module. Excitation and absorption wavelength were 360/40 nm and 470/40 nm, respectively. Nuclei were stained with Hoechst 33342 (Invitrogen, Eugene, OR, USA). The intensity of fluorescence was analyzed with respective KEYENCE BZ-X800 analysis software.
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2

Histological Analysis of Pancreatic Tissues

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Mice were perfused with 10 N formalin and fixed pancreatic tissues were embedded in paraffin. Paraffin‐embedded pancreatic tissue sections (7 μm in thickness) were deparaffinized with xylene and ethanol. Pancreatic tissue sections were stained by hematoxylin and eosin. For immunohistological staining, after permeabilization with HistoVT‐ONE (Nacalai Tesque) or 10 mmol/L citrate buffer (pH 6.0), tissue sections were blocked with 5% goat serum in PBS. The sections were incubated with an antibody for Ki67 (ab15580, Abcam) and secondary antibodies conjugated with horseradish peroxidase (ab6721, Abcam). After reaction with a 3,3′‐diaminobenzidine) (DAB) substrate (Sigma‐Aldrich), the treated sections were counterstained with hematoxylin. Images were taken with a microscope (BZ‐X800, KEYENCE) and were analyzed using software (BZ‐X800, KEYENCE).
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3

High-Resolution Imaging of Brain Tissue

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Stitched images of immunostained brain sections were acquired using the BZ-X800, Keyence microscope equipped with a 20x, .75 NA objective or using a laser scanning confocal microscope (LSM 880; ZEISS) equipped with a 63X plan Apo (NA 1.4) oil immersion objective. High resolution images of individual plaques and glia were acquired using a laser scanning confocal microscope (LSM 710; ZEISS equipped with a 63X plan Apo (NA 1.4) oil immersion objective lens or BZ-X800, Keyence microscope equipped with a 60x BZ Series infinite optical system oil-immersion objective lens. Z-stacks with a step size of 0.2 and 0.1 μm were routinely acquired with the confocal microscope and BZ-X800, respectively.
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4

Bladder Macrophage Characterization in Rats

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Bladders were isolated from the rats in all groups and fixed in 4% paraformaldehyde. The tissues were frozen and cut on a cryostat at 5-μm thickness. Sections were blocked with 5% bovine serum albumin in Tris-buffered saline containing 0.1% Tween 20 for 1 h at room temperature. The slides were incubated with mouse anti-F4/80 (1:50; Santa Cruz Biotechnology Inc., Dallas, TX, USA), rabbit anti-iNOS (1:100; Abcam plc, Cambridge, UK), or rabbit anti-CD206 (1:500; Abcam plc) overnight at 4°C and then with anti-mouse Alexa Fluor Plus 594 (1:1000; Abcam plc), anti-rabbit Alexa Fluor Plus 488 (1:1000; Thermo Fisher Scientific, Waltham, MA, USA) secondary antibodies, and 4′,6-diamidino-2-phenylindole (DAPI; Thermo Fisher Scientific) for 1 h at room temperature. Immunofluorescence images were obtained using an all-in-one fluorescence microscope (BZ-X800; KEYENCE) and analyzed using a BZ-X800 analyzer. Two random areas per bladder selection from each group were observed and the macrophage in the lamina propria was estimated within the visual fields observed at object lens 10× magnification. The percentage of iNOS- or CD206-positively stained cells per F4/80-positively stained cells in the fields was determined.
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5

Liquid-liquid phase separation of lysozyme and ovalbumin

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The formation of LLPS containing lysozyme and ovalbumin was performed according to previous reports (Santos et al. 2018; (link)Iwashita et al. 2018) (link), with a few modifications. In the first experiment, a lysozyme solution (#mg/mL in water) and an ovalbumin solution (#mg/mL in water) were mixed 1:1 ratio in water (final concentration is 2.5 mg/mL each).
Taurine (0, 20, or 200 mM) was added before mixing the proteins. 20 #microL of the solution was applied to a disposal cell counter plate (Watson Co., Japan) and then LLPS formation was checked with optical microscopies (BZ-X800, Keyence, Japan). The turbidity of the solution was measured in 96-well microplates by using a UV-Vis microplate reader (Spectramax M2 microplate reader, Molecular Devices, USA).
In the latter experiments, lysozyme and ovalbumin were added to 5mM Tris-buffer (pH7.4). Then, LLPS formation and turbidity were analyzed. Additionally, FITC-labelled lysozyme (LS1-FC-1, Nanocs Inc., USA) instead of lysozyme was mixed with ovalbumin in 5mM Tris buffer (pH 7.4), and then LLPS formation was visualized by fluorescent microscopy (BZ-X800, Keyence).
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6

Visualizing Transfected Cell Morphology

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One day before transfection, cells were seeded in a 35-mm glass base dish (IWAKI Corporation, Tokyo, Japan). One day after cell seeding, plasmid DNA and mRNA were transfected into the cells. After transfection, the EGFP- and mCherry-positive cells were visualized using BZ-X800 (Keyence Corporation, Osaka, Japan). For mitochondrial morphology analysis, MitoTracker-Green FM (Thermo Fisher Scientific) and Hoechst 33342 (Dojindo Molecular Technologies) were added to the medium, and the cells were incubated for 30 min at room temperature. The cells were then thoroughly washed twice with PBS. The cells were viewed using a BZ-X800 (Keyence Corporation).
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7

Uptake of Fluorescent-Labeled EVs in Cells

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SAS EVs or SAS‐R EVs (2 μg) were stained with the red fluorescent dye PKH26 (Sigma‐Aldrich) according to the manufacturer's instructions. The excess dye was removed using a centrifugal extrafiltration filter (Amicon Ultra‐0.5 100K device; MERCK). PKH26‐stained EVs were added to 5000 SAS cells or HSC‐2 cells. After 24 h, the uptake of PKH‐stained EVs into target cells was observed with the fluorescence microscope BZ‐X800 (KEYENCE, Osaka, Japan). Next, whole‐slide images were obtained at the same brightness/contrast with the BZ‐X800 (KEYENCE) utilizing the optical sectioning mode and capturing Z‐stacks of 16–18 μm at recommended step sizes and projected onto a full‐focus image using the BZ‐Analyzer. For all experimental conditions, the exposure times were maintained, and the number of positive cells per 50 cells was counted.
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8

Intracellular Iron and Lipid Radical Detection

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Detection of intracellular Fe2+ was performed using FerroOrange (excitation, 561 nm; emission, 570–620 nm) (DOJINDO, Kumamoto, Japan). Cells were cultured in glass-bottomed dishes for 3 days and washed with HBSS (Thermo Fisher), after which 1 µM FerroOrange was added for 30 min at 37°C, followed by observation under a microscope (BZ-X800; KEYENCE). To detect Fe2+ in mitochondria, 5 µM Mito-FerroGreen working solution (excitation, 488 nm; emission, 500–550 nm) (DOJINDO, Kumamoto, Japan) was added to the cells for 30 min at 37°C, followed by observation under a microscope. Lipid radicals were detected using LipiRADICAL Green (Funakoshi, Tokyo, Japan) (excitation, 470 nm; emission, 520–600 nm) and Liperfluo (excitation, 524 nm; emission, 535 nm) (DOJINDO, Kumamoto, Japan). Cells and cardiomyocyte were cultured in glass-bottomed dishes for 3 days and washed with HBSS, after which 1 µM LipiRADICAL Green or 4 µM Liperfluo working solution was added for 10 min at 37°C, followed by observation under a microscope (BZ-X800; KEYENCE).
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9

Quantifying Neurodegenerative Markers in Mice

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All tissue sections were statistically processed by randomly selecting at least two sections per mouse. In the images acquired with a microscope (Olympus BX53, Keyence BZ-X800), each DRG neuron was identified as a dot and the numbers were counted using the image processing software GIMP 2.10.30 (GIMP Development Team) and the image processing and analysis software ImageJ (National Institutes of Health, Bethesda, MD, USA). Similarly, lumbar spinal cord sections from RCS mice were randomly selected, and a 20,000 μm2 field of observation was cut from the images acquired by fluorescence microscopy using GIMP. Next, ImageJ was used to quantify the numbers of microglia (cells that co-expressed Iba1 and 4′,6-diamidino-2-phenylindole; n = 5 or 6 mice per group). The area occupied by GFP-positive fibers in the spinal cord was also quantified in the same manner (n = 5 mice per group). ChAT-positive and GFP- and ATF3-positive neurons in the spinal cord were similarly quantified (n = 4 or 5 mice per group). Images were adjusted identically and appropriately in each group, and were examined using the editing software supplied with the microscope (TiE-A1R Nikon: NIS-Elements Analysis; Keyence BZ-X800: BZ-X800 Analyzer) or GIMP.
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10

Liquid-liquid phase separation of lysozyme and ovalbumin

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The formation of LLPS containing lysozyme and ovalbumin was performed according to previous reports (Santos et al. 2018; (link)Iwashita et al. 2018) (link), with a few modifications. In the first experiment, a lysozyme solution (#mg/mL in water) and an ovalbumin solution (#mg/mL in water) were mixed 1:1 ratio in water (final concentration is 2.5 mg/mL each).
Taurine (0, 20, or 200 mM) was added before mixing the proteins. 20 #microL of the solution was applied to a disposal cell counter plate (Watson Co., Japan) and then LLPS formation was checked with optical microscopies (BZ-X800, Keyence, Japan). The turbidity of the solution was measured in 96-well microplates by using a UV-Vis microplate reader (Spectramax M2 microplate reader, Molecular Devices, USA).
In the latter experiments, lysozyme and ovalbumin were added to 5mM Tris-buffer (pH7.4). Then, LLPS formation and turbidity were analyzed. Additionally, FITC-labelled lysozyme (LS1-FC-1, Nanocs Inc., USA) instead of lysozyme was mixed with ovalbumin in 5mM Tris buffer (pH 7.4), and then LLPS formation was visualized by fluorescent microscopy (BZ-X800, Keyence).
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