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3 protocols using anti flag

1

Quantification and Detection of Azide-Labeled Glycans

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Following quantification of LPS in enriched and depleted samples (see Figure S3), all samples were reacted 1:1 with 500 μM Phos-FLAG overnight at room temperature for detection of azide-labeled glycans. Reacted lysates were loaded onto a 12% Tris-HCl SDS-PAGE gel, separated by electrophoresis, and transferred to nitrocellulose paper. An anti-Lewis Y antibody (GeneTex) and secondary anti-mouse IgM antibody (HRP) (GeneTex) were used to detect the Lewis Y antigen, whereas an anti-FLAG-HRP was employed to visualize FLAG-tagged proteins via chemiluminescence. Total protein loading was assessed by staining electrophoresed gels with Coomassie Brilliant Blue stain.
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2

Western Blot Analysis of Cellular Proteins

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Cells were collected by sample buffer and analyzed by electrophoresis. Proteins were transferred to polyvinylidene difluoride (PVDF, Millipore) membrane and TBST buffer (10 mM Tris-HCl, pH 8.0, 150 mM NaCl and 0.05% Tween 20) containing 5% nonfat milk was used for blocking. Anti-USP24 (Proteintech), anti-p300 (BD), anti-actin (Sigma-Aldrich), anti-ubiquitin (Santa Cruz), anti-P-gp (Genetex), anti-ABCG2 (Genetex), anti-MRP1 (Genetex), anti-MRP3 (Genetex), anti-Ezrin (Genetex), lamin A/C (Santa Cruz), anti-γ-H2Ax (abcam), anti-biotin (Genetex), anti-Flag (Genetex), anti-Rad51 (abcam), and anti-BRD7 (Sigma-Aldrich) were used for probing interested proteins. After incubated with primary antibodies, PVDF membranes were then incubated with secondary immunoglobulin antibodies linked with horse radish peroxidase (Millipore, 1:10,000). For detecting immunoprecipitated samples, light chain-specific secondary antibodies were used (Jackson ImmunoResearch, 1:10,000). ECL Western blotting detection system (Millipore) and ChemiDoc-it imager (UVP) were used for detecting signals.
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3

Western Blot Antibody Panel for Protein Analysis

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The commercial antibodies used for Western blot analysis are as follows: anti-Twist1 (1:1000, sc-81417, Santa Cruz Biotechnology), anti-USP13 (1:3000, ab109264, Abcam), anti-RNF8 (1:1000, sc-271462, Santa Cruz Biotechnology), anti-FBXL14 (1:1000, HPA053889, Sigma-Aldrich), anti-βTrcp1 (1:1000, sc-390629, Santa Cruz Biotechnology), anti-E-cadherin (1:1000, sc-8426, Santa Cruz Biotechnology), anti-N-cadherin (1:1000, sc-59987, Santa Cruz Biotechnology), anti-Vimentin (1:1000, sc-6260, Santa Cruz Biotechnology), anti-MMP9 (1:1000, sc-21733, Santa Cruz Biotechnology), anti-Ubiquitin (1:1000, sc-8017, Santa Cruz Biotechnology), anti-Flag (1:3000, GTX115043, GeneTex), anti-GFP (1:3000, GTX113617, GeneTex), anti-HA (1:3000, GTX115044, GeneTex), anti-c-Myc (1:3000, PLA0001, Sigma), anti-GST (1:3000, sc-138, Santa Cruz Biotechnology), anti-GAPDH (1:3000, GTX627408, GeneTex), anti-tubulin (1:3000, bs-0715R, Bioss), and anti-Ubiquitin K48-specific antibody (1:1000, ZRB2150, Sigma-Aldrich). anti-Flag Affinity Gel (B23102), Poly Flag Peptide (B23111) and Protein A/G mix magnetic beads (B23202) were obtained from Bimake Chemicals. Cycloheximide (S7418) and MG132 (S2619) were obtained from Selleck Chemicals. TGF-β1 (100–21) was obtained from Peprotech.
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