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36 protocols using uv 1280 spectrophotometer

1

Reactive Black 5 Dye Analysis

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A 100 mg/L stock solution of Reactive Black 5 was prepared with distilled water and diluted as required for the experimental program.
When needed, pH corrections were made with reduced volumes of NaOH 0.1 M or of HCl 0.1 M. A pH tester HI 98103 from Hanna Instruments (Bucharest, Romania) served for pH measurements.
A calibration curve with RB concentrations between 1 mg/L and 40 mg/L was plotted after reading the absorbance at the wavelength of 600 nm with the help of a UV1280 Spectrophotometer (Shimadzu, Kyoto, Japan).
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2

Absorption Spectra of Sample Solutions

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Absorption spectra
of freshly prepared solutions of the samples were acquired at 25 °C
in the range of 200–800 nm with a Shimadzu UV-1280 spectrophotometer,
taking into account the solvent cutoff. Samples were dissolved in
the proper solvents, and the resulting solutions were placed in QS
quartz cuvettes (path length 1 cm).40 (link)
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3

Quantifying Tear Histamine and Substance P

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On day 19, 5 µL of tears was sampled from the eyes of animals 15 min after OA challenge, and were rapidly analyzed for histamine or SP concentrations.
Histamine concentrations were determined using a commercial histamine measurement kit (Kikkoman Co., Chiba) according to the manufacturer’s instructions. Sampled cells were quantified based on absorbance at 470 nm by using a UV-1280 spectrophotometer (Shimadzu Co., Kyoto, Japan). SP concentrations in tears were measured using a commercial Substance P ELISA (Caymen Chemical Co., Ann Arbor, MI) based on the competitive binding technique and according to the manufacturer’s instructions. ELISA plates were washed using PBS, and absorbance at 412 nm for each well was measured using an infinite M1000 microplate reader (TECAN, Månnedorf, Switzerland).
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4

Isolation and Characterization of Weissella sp. SNUL2

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The strain Weissella sp. SNUL2 was isolated from the Korean traditional fermented food, Sikhae. Various fermented food samples were obtained from four regions of Gangwon-do (Yangyang, Gangneung, Jumunjin, and Samcheok) and one region of Gyeongsangbuk-do (Daegu) (Table S1). After appropriate washing steps, all samples were cultured in 2% de Man, Rogosa, and Sharp (MRS, BD Difco™, Franklin lakes, NJ, USA) agar at 37 °C overnight. The colonies obtained were restreaked to isolate single colonies; each colony was sent to Macrogen (Seoul, Korea) for 16S rRNA sequencing. Based on the results, several thousand beneficial strains, including Weissella sp. SNUL2, were collected.
Weissella sp. SNUL2 was cultured in MRS broth for seed culture at 30 °C for 12 h in a shaking incubator at 100 rpm. The main culture was inoculated with a fresh 1% (v/v) inoculum and propagated in 100 mL of MRS medium at 30 °C for 24 h. Subsequently, the samples were collected every 4 h to measure the optical density of the culture broth at 600 nm (OD600) using a UV-1280 spectrophotometer (Shimadzu, Kyoto, Japan). All OD600 values were converted to colony-forming unit (CFU)/mL based on the assumption that an OD600 of 1 = 9.9 × 108Weissella sp. SNUL2 CFU/mL.
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5

Characterization of Copolymer Composition

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The presence of representative functional groups in copolymers was investigated by Thermo Nicolet FTIR spectrophotometer (Nicolet 6700, Thermo scientific USA). Small amounts of PCL-PEI, PCL-PEI-Fol and PCL-PEI-PEG block polymers were taken and measured their FTIR spectra in the range of 4000–400 cm−1. For studying the chemical makeup of copolymers, Broken MSL-300 spectrometer was utilized to get H-NMR spectra of copolymers. Tetramethylsilane and chloroform were used as internal standard and solvent respectively. The amount of folate attached with PCL-PEI copolymer was determined by Shimadzu UV-1280 spectrophotometer. Standard solutions of folate in serial dilution and PCL-PEI-Fol solution were prepared and recorded their spectra. Later, the attached quantity of folate in PCL-PEI-Fol was calculated by standard curve method.
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6

Quantifying Myoglobin in Fresh Meat

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Total myoglobin content was measured in non-aged steaks as not relevant changes were expected over ageing time. The method by Faustman and Philips [55 ], with minor modifications was followed. Previously thawed (4 °C, overnight) and minced (domestic grinder) 5 g of meat were homogenized in iced cold sodium phosphate buffer and set aside for 1 h (4 °C, darkness). Samples were then centrifuged (32,000× g) for 45 min and filtered through a Whatman filter paper (n °1, Whatman PLC, UK). Absorbance was read at 525 nm in a UV 1280 spectrophotometer (Shimadzu Corporation, Japan) and the total myoglobin concentration was estimated applying the extinction coefficient of 7.6 mM−1 cm−1 as proposed by Bowen [56 (link)].
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7

Determination of Photosynthetic Pigments

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Determination of the content of photosynthetic pigments was performed by the method of Arnon et al. (1956) [44 ] modified by Lichtenthaler and Wellburn (1983) [45 (link)] for chlorophyll “a”, “b” and total chlorophyll, and the method of Hager and Mayer-Berthenrath (1966) [46 (link)] for carotenoids. The material (15 fully developed, randomly selected leaves) was collected from each experimental variant, which were then divided into smaller fragments. From the prepared material, 0.03 g of fresh mass was obtained for the extraction of pigments. The samples were ground in a mortar with 10 cm3 of 80% acetone. The solutions were placed in test tubes and then transferred to a centrifuge to separate the liquid phase from the solid phase. Centrifugation was carried out for 10 min at 1500 rpm. The optical density of the samples was determined using a Shimadzu UV-1280 spectrophotometer (Japan). Determinations were made at wavelengths: 440, 645 and 663 nm. The content of dyes was calculated according to the formulas:


where Ek—extinction at a certain wavelength, V—amount of 80% acetone used for extraction and W—mass of fresh sample in grams, FM —fresh mass.
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8

Cephalexin Quantification Protocol

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All the chemicals (cephalexin (Cayman Chemical, Tallinn, Estonia), sodium hydroxide (Chempur, Piekary Śląskie, Poland), hydrochloride acid (Chemical Company, Iași, Romania), sodium alginate (Carl Roth, Karlsruhe, Germany), calcium chloride (Chempur, Piekary Śląskie, Poland), sodium chloride (Chemical Company, Iași, Romania), ethanol (Chemical Company, Iași, Romania)) required in the experiments were of analytical purity and were used without further purification.
Yeast strain of Saccharomyces cerevisiae was kindly donated by Rompak Company (Pașcani, Romania).
A stock solution of cephalexin (Figure 1) with a concentration of 500 mg/L was prepared by dissolving the reagent in distilled water and kept at 4 °C in a closed vessel.
For the calibration curve, 0.02, 0.1, 0.2, 0.3, 0.4, 0.5 and 0.6 mL of CPX stock solution were placed in a series of volumetric flasks and the volumes were adjusted to 10 mL in order to obtain concentrations ranging between 1 mg/L and 30 mg/L. The samples absorbance was acquired at 260 nm with the help of a UV1280 spectrophotometer (Shimadzu, Tokyo, Japan). A calibration graph (absorbance vs. concentration) was plotted and a linear regression equation was recovered.
The other work solutions were obtained by appropriate dilutions. When necessary, NaOH (0.1 M) or HCl (0.1 M) were used to adjust the pH.
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9

UV-Vis Absorption Spectra of Piplartine Analogues

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Ultraviolet and visible light (UV–Vis) absorption spectra of piplartine and its analogues were obtained with a UV-1280 spectrophotometer (Shimadzu, Kyoto, Japan). Purified piplartine and its analogues (1G, 1M, 6B and 14B) were solubilised in HPLC-grade acetonitrile and diluted to a concentration of 15 μg/mL. Because of its high absorbance and low solubility, the 19A analogue was further diluted to 7.5 μg/mL before measurement. Scans were performed using a quartz cuvette with a path length of 1 cm in the 200–450 nm range against a baseline recorded with acetonitrile at room temperature.
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10

Plasma and Urine Protein Preparation

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The plasma samples were depleted from albumin and immunoglobulin using ProteoPrep depletion columns (Sigma-Aldrich, St. Louis, MO, USA) according to the manufacturer’s protocol. Proteins from the urine samples were concentrated with Amicon Ultra-4 3 kDa centrifugal filter columns (Merck Millipore, County Cork, Ireland). The protein concentrations were determined by UV-1280 spectrophotometer (Shimadzu, Kyoto, Japan) and samples with 4 μg of protein were taken for mass spectrometry. The proteins were reduced by dithiothreitol, alkylated by iodoacetamide, and digested by trypsin according to the manufacturer’s protocols (Thermo Scientific, Waltham, MA, USA). The samples were desalted by 10 μL C18 pipette tips from the same manufacturer in accordance with its protocol and dried before analysis.
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