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Silentfect lipid reagent

Manufactured by Bio-Rad
Sourced in United States, China, Germany, Canada

SiLentFect Lipid Reagent is a cationic lipid-based transfection reagent for the delivery of small interfering RNA (siRNA) and other nucleic acids into a variety of mammalian cell types. The reagent forms complexes with nucleic acids, which are then taken up by cells, enabling efficient gene silencing.

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140 protocols using silentfect lipid reagent

1

Analyzing miRNA Expression in 293T Cells

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The human 293T cell line was acquired from Jishishengming (Beijing, China) and grown in a humidified atmosphere at 37°C with 5% CO2 using MEM medium (Gibco, Shanghai, China) supplemented with 10% fetal bovine serum (Corning, Shanghai, China) and 1% penicillin and streptomycin antibiotics (Gibco, Shanghai, China). The culture medium was replaced every other day. PcamiR1, its analogue miRNA (has-mir-365a-5p), and a control miRNA were designed and supplied by Jishishengming (Beijing, China). Their sequences are listed in Table F in S1 Text. The SiLentFect lipid reagent (Bio-Rad, California, USA) was used for transfection, and the experiments were performed as per Vinther [80 (link)]. Protein was extracted from the water-treated cells or transfected cells after 48 h and detected by western-blotting.
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2

Investigating CCl2 (HeLa) Cell Signaling

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Cervix carcinoma CCl2 (HeLa) cells ATCC (LGC Standards GmbH, Wesel, Germany) were cultured in RPMI 1640 medium, supplemented with FCS (10%; Biochrom GmbH (Berlin, Germany)), 2‐[4‐(2‐hydroxyethyl)piperazin‐1‐yl]ethanesulfonic acid (HEPES) (20 mM, PAA) and antibiotics (penicilline/streptomycine, 1× final concentration, PAA) in a humidified atmosphere at 37°C in the presence of 5% CO2. siRNA transfections were accomplished as described previously 8, using 75 nM siRNA and the SilentFect lipid reagent Bio‐Rad Laboratories GmbH (Munich, Germany). Knockdown cells were harvested the third day after siRNA transfection or at times indicated in the figures. Prior to inhibitor treatments and/or cell stimulation with TNF (10 ng/ml), as indicated in the figures, cells seeded on culture plates 1 day before were serum‐starved overnight.
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3

Targeted Silencing of Key Signaling Proteins

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Non-specific control siRNA or HCRP-1 siRNA, and siRNAs for ERK1/2 and EGFR were purchased from Integrated Biotech Solutions (Shanghai, China). The sequences of siRNAs are as follows:HCRP-1, 5′-GACACUGUUUCUUCUUCAACA-3′; ERK1, 5′-GACCGGAUGUUAACCUUUATT-3′; ERK2, 5′-CCAAAGCUCUGGACUUAUUTT-3′; EGFR, 5′-CACAGUGGAGCGAAUUCCUTT-3′. The cells were transfected with siRNA using siLentFect Lipid Reagent (Bio-Rad, Hercules, CA, USA) according to the manufacturer’s instructions.
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4

Genetic Manipulation of Colon Cancer Cells

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siRNAs for HCRP-1, AKT, and EGFR were obtained from Integrated Biotech Solutions (Shanghai, China). The sequences of siRNAs are as follows: HCRP-1, 5′-GACACUGUUUCUUCUUCAACA-3′ AKT, 5′-GAAGGAAGUCAUCGUGGCCTT-3′ EGFR, and 5′-CACAGUGGAGCGAAUUCCUTT-3′. Transfection with siRNA was performed using siLentFect Lipid Reagent (Bio-Rad, Hercules, CA, USA) according to the manufacturer’s instructions. The pcDNA3.1-control and pcPNA3.1-BIM expression plasmids were obtained from Integrated Biotech Solutions (Shanghai, China). Transfection of the pcPNA3.1-control and pcPNA3.1-BIM plasmids into the colon cancer cells was carried out using Lipofectamine 2000 transfection reagent (Invitrogen, Shanghai, China) following the manufacturer’s protocol.
SW620 cell lines were infected with lentivirus-packing HCRP-1 shRNA vector and control vector, respectively (IBS, Shanghai, China). Target cells were established by infecting with lentivirus about 2 days and then screened out with puromycin (Sigma, Shanghai, China) for 2 weeks.
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5

S2 Cell Transfection Protocols

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S2 cells were transfected with expression vectors by HilyMax transfection reagent (Dojindo, Tokyo, Japan) or siLentfect lipid reagent (Bio-Rad Laboratories, Hercules, CA, USA).
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6

Silencing Gene Expression via siRNA

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siRNA pools listed in Supplementary Table 4 were obtained from Dharmacon or Thermo Fisher Scientific and transfected into cells using siLentfect Lipid Reagent (Bio-Rad) or Lipofectamine RNAiMAX Transfection Reagent (Thermo Fisher Scientific) according to the manufacturer’s protocol.
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7

Rap2a Overexpression in Renal Cancer

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Transfection of pcDNA3.1-control and pcDNA3.1-Rap2a expression the plasmids were carried out using Lipofectamine 2000 transfection reagent (Invitrogen, Shanghai, China) following the manufacturer’s protocol. Rap2a siRNA was purchased from Gene-Pharma (Shanghai, China) and transfected using siLentFect Lipid Reagent (Bio-Rad, Hercules, CA, USA) according to the manufacturer’s instructions. After transfection, cells were harvested for subsequent experiments. The Rap2a overexpression 786-O cell lines and control 786-O cell lines were established by infecting with lentivirus packing Rap2a expression vector (GFP is not fused with Rap2a in this vector) and control vector respectively. Target cells were infected with lentivirus for 48 hours then selected with puromycin (Santa Cruz) for 3 weeks.
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8

hMSC Transfection with miRNA Mimics

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MiRNA and scrambled RNA oligomers (NC) were purchased from Genolution Pharmaceuticals (Genolution Inc., Korea). The reagents were transfected into hMSCs at a final concentration of 100 nM using siLentFect™ Lipid reagent (Bio-Rad). miRNA mimics and scrambled RNA oligomers were added to cells according to the manufacturer’s instructions. After a 4 h transfection, the media was replaced.
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9

Targeted Gene Knockdown in MDMs

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Transfection with siRNA was performed using siLentFect Lipid Reagent (Bio-Rad) for RNAi according to the manufacturer’s protocol. Gene knockdown was evaluated by reverse transcription quantitative PCR (RT-qPCR). MyD88, UNC93B1, TLR4, TLR7, TLR8, NOD1 and STING pooled ON-TARGETplus human siRNAs (Dharmacon/Thermo Scientific) were used to target MyD88, UNC93B1, TLR4, TLR7, TLR8, NOD1 and STING. MDMs were treated with 20 nM siRNA two times (day -4 and day -2) before changing to fresh medium (RPMI 1640/10% human serum), rest for 1–2 hours and challenge with TLR ligands or Mav.
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10

Podocyte Silencing and Visfatin Treatment

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ASC siRNA was purchased from Qiagen (Valencia, CA, USA), which was confirmed to be effective in silencing the ASC gene in different cells by the company. The scrambled RNA (Qiagen, Valencia, CA, USA) was also confirmed as non-silencing double-strand RNA and was used as a control. Podocytes were serum-starved for 12 h and then transfected with ASC siRNA or scrambled siRNA using siLentFect Lipid Reagent (Bio-Rad, Hercules, CA, USA). After 18 h of incubation at 37 °C, the medium was changed and visfatin (2 μg/ml) added into the medium for indicated time spans in different protocols.
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