The largest database of trusted experimental protocols

43 protocols using j2 21

1

Biosynthesis and Purification of Copper Nanoparticles

Check if the same lab product or an alternative is used in the 5 most similar protocols
After incubation, the culture was centrifuged at 5000 rpm at 4 °C for 20 min in a Beckman J2-21 with swinging rotor to separate the cell pellet from the cell-free supernatant. Nanoparticles were purified from both the supernatant and pellet. To recover CuNPs present in the cell-free supernatant, the solution was centrifuged at 17,000× g for 15 min in the same centrifuge with a fixed rotor. The CuNPs containing the pellet was then resuspended in double-distilled water (ddH2O) and washed twice by repeated centrifugation steps.
To recover CuNPs from the cell pellet, ultrasonic wave shocks of short durations (15 s) were given to the ddH2O-suspended pellet to rupture the microbial cell wall. After sonication, the sample was centrifuged 5000 rpm for 20 min (Beckman J2–21, Fullerton, California) and the NPs were recovered from the supernatant. This step was repeated three times to completely remove the cell debris from the supernatant. To recover CuNPs present in the cell-free supernatant, the solution was centrifuged at 17,000× g for 15 min in the same centrifuge with a fixed rotor. After being washed twice with deionized water and dried at 80 °C in an oven, the CuNPs were used for further characterization and experiments.
+ Open protocol
+ Expand
2

Peptide Extraction from Plant Material

Check if the same lab product or an alternative is used in the 5 most similar protocols
To obtain the peptide extracts, the original procedure was performed to remove all high-molecular weight components (preliminary proteins and carbohydrates) and secondary metabolites. Taking 10 g of the raw plant, over ground material, was ground, soaked in 500 mL of 1 M acetic acid (Merck, Darmstadt, Germany), and left for 1 h at room temperature. During the exposition, the suspension was obtained using ultrasonication (five times through 10 min). Subsequently, the suspension was heated at 100 °C for 30 min, cooled, and centrifuged (75,000× g, 40 min, using a J2-21 (Beckman, Krefeld, Germany). Acetone was added to collect the supernatant at a ratio of 2:5 and precipitated at +4 °C overnight. Then, a pellet was separated by centrifugation (40,000× g, 40 min, J2-21 (Beckman, Germany). To improve the dissolving of a peptide extract, the pellet was dissolved in 100 mM acetic acid and repeatedly centrifuged (twice, 40,000× g, 20 min). To remove residual acidic quantities, the pellet was lyophilized twice by dissolving in 50 mL of MQ water.
+ Open protocol
+ Expand
3

Lyophilized Biomass FAME Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Liquid cultures were harvested using a high-speed centrifuge (Beckman J2–21, Baltimore, USA) at 4000 x g for 10 minutes. The pellets were stored at −80 °C and lyophilized for 24 h at −40 °C under freeze-dried machine.
FAME production followed the procedure provided by.47 (link) FAMEs were analyzed using a Agilent’s Gas Chromatography (GC) system with discharge ionization detection equipped with a capillary column (Stabilwax-DA, 30 m 0.25 mm ID, film thickness 0.25 mm). GC inlet was set at 250 °C and the injections were in a volume of 1 μL. The temperature program started at 50 °C and then increased to 170 °C at a rate of 20 °C min−1, with a plateau for 1 min. After this plateau, the temperature increased from 170 °C to 220 °C at a rate of 4 °C min−1 and then kept constant for 14 minutes. The total analysis time was 35 minutes. Helium was used as carrier gas.
+ Open protocol
+ Expand
4

Retroviral Production by Electroporation

Check if the same lab product or an alternative is used in the 5 most similar protocols
For retroviral production, 293T cells at 80% confluence were trypsinized and single cell suspension was prepared in PBS for transfection by electroporation as described [8 (link)]. Briefly, a 400-μl mixture containing 107 cells and 15 μg of plasmid DNA was electroporated with square wave delivered at 110 V and 25 ms by the Easyject electroporator (Bio-Rad). The15 μg of plasmid DNA combined 4 plasmids (1.7 μg of pAdvantage, 2.6 μg of pVSV-G, 4 μg of pGag-pol, and 6.7 μg of pLegfp, pLcherry or pGTgfp, respectively). Electroporated cells were incubated on ice for 15 min, centrifuged for 5 min at 2000 rpm (Centrifuge 5415C, Eppendorf), resuspended in DMEM-10% FCS and seeded onto 10-cm dishes for culture. The culture medium containing RVs was collected at 48h after transfection, filtrated through a 0.45-μm filter (Sartorius) and concentrated by centrifugation at 4°C for 150 min at 20,000 rpm (Beckman J2-21). The RV pellet was gently resuspended in 100-μl of ESM4 medium for storage at -80°C and cell infection.
+ Open protocol
+ Expand
5

Silica Encapsulation of CdSe@ZnS Quantum Dots

Check if the same lab product or an alternative is used in the 5 most similar protocols
The silica shell growth onto the ‘as-synthesized’ CdSe@ZnS QDs (see Supplementary Data for experimental details) was carried out by using a water-in-oil microemulsion approach [32–36 (link)]. Sequentially, 350 μl of IGEPAL CO-520, 200 μl of NH4OH and a varied volume of TEOS (in the range of 20 to 50 μl) were injected to 6 ml of a cyclohexane solution of QDs (1.5·10−6 M). The solution was then kept under vigorous stirring and controlled temperature 28°C for 18 h.
Methanol was added to disrupt the micelle and the QD@SiO2 NPs were collected by centrifugation at 7800 g for 20 min (Beckman J2-21, Rodano (MI), Italy). Repeated cycles of NP dispersion in ethanol and centrifugation were carried out to completely remove surfactant residuals. The prepared NPs were finally dispersed in 4 ml of ethanol. The QD@SiO2 concentration in solution was nearly 1015 NPs in 4 ml of ethanol, and was calculated by using the method described in the Supplementary Material.
+ Open protocol
+ Expand
6

Serum Isolation for RNA Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Peripheral blood samples from all participants were taken in the morning using a butterfly device into serum separator collection tubes, provided with Clot activator and gel for serum separation as additives (BD Biosciences). Collection tubes were treated according to current procedures for clinical samples. In order to separate serum from blood cells, tubes were rotated end-over-end at 20°C for 30′ and then centrifuged at 3,500 rpm at 4°C for 15′ in a Beckman J2-21. Supernatants were aliquoted into 1.5 ml RNase-free tubes and stored at −80°C. Prior to RNA extraction, stored supernatants were centrifuged again at 3500 rpm at 4°C for 15′ to remove circulating cells or debris. Serum samples were aliquoted into 1.5 ml RNase-free tubes and they were either immediately used for RNA extraction or stored at −80°C until analysis (Rizzo et al., 2015 (link)).
+ Open protocol
+ Expand
7

Microalgae Pigment Extraction Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Three extracts of the pigments were obtained from 0.5 g of lyophilized microalgae, adding 50 mL of acetone (99% v/v), methanol (99% v/v), and ethanol (96% v/v) as solvent extractants. The extraction was ultrasonic-pulses-assisted (Generator ultrasonic pulses Branson Digital Sonifier Qsonica, LLC. E.U.A). The sample was subjected to 400 w of ultrasonic power for 3 pulses, at 500 mHz and 15 s per pulse at an amplitude of 30%. Then, it was kept in constant agitation for 1 h in darkness. The sample was centrifuged (Beckman model J2-21) for 15 min at 4 °C and 10,000× g. Later, each extract was concentrated in a rotary evaporator (Laborota 4000 Heidolph, Schwabach, Germany) at 45–50 °C. The supernatant was recovered for further analysis. The extracts were re-suspended in three different solvents, acetone (90%), methanol (99%), and ethanol (99%), where the concentrations of the extracts varied according to the biological activities tested [20 (link)].
+ Open protocol
+ Expand
8

Characterizing Pigment Produced by Marinomonas

Check if the same lab product or an alternative is used in the 5 most similar protocols
The 1% (v/v) of biodiesel solution containing the yellow pigment formed after incubation with Marinomonas sp. ef1 cells was centrifuged for 10 min at 3000 rpm (Beckmann J2-21) to remove bacterial cells. The supernatant was collected and filtrated by using a PTFE sterile ReliaPrep Syringe™ filters (0.22 μm, Ahlstrom) for further investigations.
The pH values of yellow pigment samples were adjusted by the addition of 1 M NaOH and 1 M HCl (Carlo Erba) to the solution and measured by using a pH-meter electrode CDC401 (Hach).
At each pH value, the UV-vis and fluorescence spectra of the yellow pigment were recorded by using Agilent Cary 8454 UV-Vis Diode Array spectrophotometer and an Ocean HDX fluorimeter (Ocean Insight), equipped with a monochromatic laser at 365 nm. The Fe(iii) complex of the yellow pigment was spectrophotometrically monitored in presence of 6 μM FeCl3 (Sigma Aldrich).
+ Open protocol
+ Expand
9

Phenolic Extraction from Freeze-Dried Plant

Check if the same lab product or an alternative is used in the 5 most similar protocols
The plant material was freeze-dried (FreeZone 2.5, Labconco, Kansas City, MO, USA) and a sample of the dry buds was ground to a coarse powder using a stainless-steel mill (A 11 Analytical mill, IKA, Staufen, Germany). The modified procedure described by Marinova et al. [29 ] was used to extract phenols. Briefly, 0.25 g of powdered tissue was extracted with 10 mL of methanol/water (80:20, by volume) for 20 min with an ultrasonic bath (Sonorex Digitec DT 100H, Bandelin, Berlin, Germany). An aliquot was centrifuged for 5 min at 14,000 RPM/21,255 RCF (Beckman Instruments J2-21, Palo Alto, CA, USA).
+ Open protocol
+ Expand
10

Liver Tissue Homogenization and Centrifugation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Liver tissue was homogenized in 1:3 (w/v) Tris–HCl buffer (50 mM, pH 7.5) at 4 °C. The final concentration of the homogenate was adjusted to 100 mg tissue/ml (Potters B.BRALUN type: 853304/0). The crude homogenates were centrifuged at 8000 rpm and 4 °C for 30 min (BECKMAN model J2-21). The supernatant was used for biochemical assays.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!