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5 protocols using perfect real time supporting system

1

Quantitative Analysis of Inflammatory Cytokines in Jejunum

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On day 1, jejunum tissue was washed with cold phosphate buffered saline (PBS), and stored in RNA later (Ambion, Austin, TX, USA) at 4°C before use. Total RNA was extracted using Separose RNA-I Supper G (Nacalai Tesque) and reverse transcription (RT) was performed using PrimeScript Reverse Transcriptase (Takara). Quantitative polymerase chain reaction (PCR) was carried out using ABI 7500 (Applied Biosystems, Foster City, CA, USA) with SYBR Premix ExTaq (Takara). Specific primer sets of β-actin (MA050368), TNF-α (MA097070), and IL-1β (MA025939) were obtained from the Perfect Real-Time Supporting System (Takara). Expression levels of TNF-α and IL-1β mRNA were calculated using the comparative CT (ΔΔCT) method (normalized to the mean value of the normal group).
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2

Cytokine Expression Profiling in Mouse Ileum

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Ileal tissues were washed with cold phosphate-buffered saline and stored
in RNAlater Stabilization Solution (Thermo Fisher Scientific) at 4°C
until use. Total RNA was extracted with the use of Sepasol-RNA I Super G
(Nacalai Tesque) according to the manufacturer’s instructions and
reverse-transcribed with the use of PrimeScript Reverse Transcriptase (Takara
Bio, Shiga, Japan). Thermal Cycler Dice Real-Time System (Takara Bio) with SYBR
Premix ExTaq II (Takara Bio) was used to quantify the expression of cytokines.
Predesigned primer sets for mouse TNF-α (primer set MA097070), IL-6
(primer set MA039013), interferon-γ (IFN-γ) (primer set MA025911),
IL-17 (primer set MA157056) and TATA-binding protein (TBP) (primer set MA050367)
were obtained from the Perfect Real-Time Supporting System (Takara Bio). The
mRNA expression level was normalized to the expression of TBP.
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3

LPS-Induced Cytokine Expression in RAW264 Cells

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Mouse monocyte/macrophage cell line RAW264 was obtained from RIKEN BRC
(Ibaraki, Japan). The cells were grown in Dulbecco’s modified Eagle
medium (DMEM: Wako) containing 10% fetal bovine serum with 100 U/ml of
penicillin G and 100 μg/ml of streptomycin at 37°C in 5%
CO2 with a humidified atmosphere. Subconfluent cells in 12-well
plates were exposed to LPS (Sigma-Aldrich) at a concentration of 1 μg/ml,
and total RNA was extracted 4 h later. Subsequently, reverse transcription and
PCR were performed as described in the previous section. Predesigned primer sets
for mouse TNF-α (primer set MA097070), IL-6 (primer set MA039013), IL-12A
(primer set MA0287533), IL-23A (primer set MA095159), and TBP (primer set
MA050367) were obtained from the Perfect Real-Time Supporting System (Takara
Bio). The messenger RNA expression level was normalized to the expression of
TBP. CN210 (0.1, 1 and 10 μM) and dexamethasone (1 μM) were
cotreated with LPS in RAW264 cells.
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4

Cytokine Expression Profiling in Ileal Tissues

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Ileal tissues were washed with cold phosphate-buffered saline and stored in RNAlater (Ambion, Austin, TX, USA) at 4 °C until use. Total RNA was extracted using Sepasol-RNA I Super G (Nacalai Tesque) according to the manufacturer's instructions and reverse-transcribed using PrimeScript Reverse Transcriptase (Takara Bio, Shiga, Japan). Expression of cytokines was quantified using a Thermal Cycler Dice Real Time System (Takara Bio) with SYBR Premix ExTaq II (Takara). Pre-designed primer sets for mouse TNF-α (primer set MA097070), IL-6 (primer set MA039013), IFN-γ (MA025911), IL-17 (MA157056), and TATA-binding protein (TBP) (MA050367) were obtained from the Perfect Real-Time Supporting System (Takara Bio). The mRNA expression level was standardised to that of TBP.
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5

Evaluating Anti-inflammatory Effects of Compounds on RAW264 Cells

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Mouse monocyte/macrophage cell line RAW264 were obtained from RIKEN BRC (Ibaraki, Japan). The cells were grown in Dulbecco's modified Eagle medium (DMEM: Wako) containing 10% fetal bovine serum (FBS) with 100 U/mL of penicillin G and 100 µg/mL of streptomycin at 37 ˚C in 5% CO 2 with a humidified atmosphere. Sub-confluent cells in 12-well plate were exposed of lipopolysaccharide (LPS) (Sigma-Aldrich) at a concentration of 1 µg/mL and total RNA was extracted 4 h later. Subsequently reverse transcription and PCR were performed as described above. Pre-designed primer sets for mouse TNF-α (primer set MA097070), IL-6 (primer set MA039013), IL-12A (MA0287533), IL-23A (MA095159), and TATA-binding protein (TBP) (MA050367) were obtained from the Perfect Real-Time Supporting System (Takara Bio). The mRNA expression level was standardised to that of TBP.
. CC-BY 4.0 International license perpetuity. It is made available under a preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in The copyright holder for this this version posted January 24, 2020. ; https://doi.org/10.1101/2020.01.24.917948 doi: bioRxiv preprint CN210 at 0.1, 1 and 10 μM and dexamethasone at 1 μM were co-treated with LPS in RAW264 cells.
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