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4 protocols using coomassie blue dye

1

Reagents and Chemicals for Cell Culture Studies

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Fetal Bovine Serum (FBS) and Phosphate Buffered Saline (PBS) were purchased from Hyclone™, ThermoFisher Scientific, Waltham, MA, USA. HEPES, EDTA, EGTA, TEMED, isopropanol, aprotonin, pepstatin, phenylmethanesulfonyl fluoride (PMSF), leupeptin, sodium fluoride (NaF), sodium orthovanadate (Na3VO4), diethyldithiocarbamate (DDC), doxorubicin, etoposide, fludarabine, 5-flouroUracil (5-FU), cisplatin, dimethyl-9,9’-biacridinium dinitrate (Lucigenin), N-acetyl-cysteine (NAC) were purchased from Sigma-Aldrich, St. Louis, MO, USA. Venetoclax (VEN) was purchased from Medchem Express LLC. Streptomycin–penicillin and l-glutamine were purchased from Gibco. Coomassie Blue dye and bovine serum albumins (BSA) were purchased from ThermoFisher Scientific. Methanol and sodium dodecyl sulphate (SDS) were purchased from Merck, Kenilworth, NJ, USA. Sucrose and 30% acrylamide/bis solution were purchased from Bio-Rad. Goat anti-mouse and anti-rabbit IgG horseradish peroxidase conjugated secondary antibodies were purchased from Pierce, TX, USA. Protein A agarose beads were purchased from Santa Cruz, TX, USA. Chloromethyl-2-,7-dichlorofluorescin diacetate (DCFDA) and MitoSox™ were purchased from Molecular Probes, Thermo Fisher Scientific.
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2

Characterization of Complement C5 by SDS-PAGE and Western Blotting

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C5 (human or mouse; 2 μg) was resolved by sodium dodecyl sulphate–polyacrylamide gel electrophoresis (SDS–PAGE) under reducing and non‐reducing conditions on 7·5% PAGE gels, alongside commercially sourced human C5 (Complement Technology Inc, Tyler, TX). Gels were stained with Coomassie Blue dye (ThermoFisher). For Western blotting, 1 μg of C5 was resolved by SDS–PAGE under reducing and non‐reducing conditions as above, then electrophoretically transferred onto 0·45‐μm nitrocellulose membrane (GE Healthcare). After transfer, non‐specific sites on the membrane were blocked with 3% bovine serum albumin (BSA) in PBS containing 0·1% Tween‐20 (PBS‐T). After washing in PBS‐T, the membrane was incubated with the primary antibody; RO7112689 (at 1 μg/ml in 3% BSA PBS‐T) or polyclonal (goat) anti‐human C5 (CompTech, Texas, USA; A220; 2 μg/ml in 3% BSA PBS‐T). After washing, bound antibodies were detected by incubation with donkey anti‐human IgG‐horseradish peroxidase or rabbit anti‐goat IgG‐horseradish peroxidase conjugate (Jackson ImmunoResearch, W Baltimore Pike, West Grove, USA; 709‐036‐149, 305‐035‐045) at 1 : 5000 in PBS‐T. After washing, the blot was developed with enhanced chemiluminescence (GE Healthcare) and visualized by autoradiography.
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SDS-PAGE Analysis of Purified E2 Proteins

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Purified E2 proteins were analyzed in reducing and non-reducing conditions using Sodium Dodecyl Sulfate-Polyacrylamide Gel Electrophoresis (SDS-PAGE) followed by Coomassie Staining. Briefly, the samples were mixed with loading dye (25 mM Tris, 192 mM Glycine, 20% glycerol, 4% SDS, 0.1% bromophenol blue in milli-Q water) and Dithiothreitol (DTT) (for reducing conditions) and heated at 99 °C for 5 min prior loading on a 4–12% Tris-Glycine gel (Invitrogen, Carlsbad, CA, USA). The gels were run for 30 min at 200 V in running buffer (50 mM MOPS, 50 mM Tris, pH 7.7) at 4 °C. Then, gels were directly stained with Coomassie blue dye (NOVEX®, Invitrogen, Carlsbad, CA, USA) and washed with milli-Q water until the band pattern was visible.
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Zymography Analysis of MMP2 Activity

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Gelatinolytic activity of MMP2 was measured in INS-1 cells by zymography. Proteins were extracted using the same protocol described above but without denaturation. An equal amount of protein was loaded on the 10% SDS-PAGE gels containing 1 mg/mL gelatin. The gels were equilibrated in the Novex zymogram renaturing buffer (Invitrogen) for 30 min at room temperature with gentle agitation, before being incubated in Novex zymogram developing buffer (Invitrogen) at 37°C overnight. The gels were then stained with Coomassie Blue dye (Invitrogen) and photographed after destaining in double-distilled water for at least 7 h. Band intensity was analyzed by Bio-Rad ChemiDoc XRS+ software.
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