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7 protocols using rat igg2a isotype control

1

FluMist Vaccine T-cell Depletion Study

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To test the role of T-cells in the cross-protection induced by FluMist vaccine, mice were vaccinated with FluMist on days 0, 14, and 28. Mice were challenged with 100 × LD50 PR8 influenza virus on day 42 post-vaccination. On days 1 and 3 before challenge, and day 1 after challenge, groups of mice were injected intraperitoneally with rat anti-mouse antibodies: 100 μg anti-CD4+ antibody, 100 μg anti-CD8a+, 100 μg CD4+ and 100 μg CD8+ antibodies, or 100 μg rat IgG2a isotype control (BD Pharmingen). After viral challenge, mice were monitored daily for clinical symptoms and survival.
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2

Immunohistochemical Detection of T Cell Subsets

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Brains were removed from deeply anesthetized and exsanguinated mice, frozen in liquid nitrogen and sectioned in a cryostat. Parallel brain sections (20 μm thick) were fixed 45 min in 4% paraformaldehyde for CD4 immunostaining or 4 min in 4% phosphate buffered formaline, pH 7.4, followed by 2 min in 50%, 100%, and 50% acetone, respectively, and finally air dried for CD8a immunostaining. Sections were then rinsed in 0.5 % triton X-100 diluted in 0.05M trizma base buffered saline (TBS+T), pH 7.4, and incubated with 10% fetal calf serum (FBS) in TBS+T before incubation overnight at 4°C with purified rat-anti-mouse CD4 IgG2a (2.5 μg/mL) (553647, BD Pharmingen) or purified rat-anti-mouse CD8a IgGa (7 μg/mL) (MCA1108GT, AbDSerotec) diluted in 10% FCS in TBS+T. Parallel sections were incubated with rat IgG2a isotype control (2.5–7 μg/mL) (BD Pharmingen). After a rinse in TBS+T, endogenous peroxidase activity was blocked with 1.9% H2O2 in TBS, and sections were rinsed in TBS+T before and after incubation with biotinylated goat anti-rat IgG antibody (5 μg/mL) (BA9400, Vector Laboratories Inc) and HRP-conjugated streptavidin (1:300) (RPN1231V, GE Healthcare), respectively, diluted in 10% FCS in TBS+T. After a final rinse in TBS+T, the colour signal was developed in 0.05% 3.30-diaminobenzidine tetrahydrochloride and 0.003% H2O2 in TBS. Finally, sections were coverslipped with Depex.
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3

Multiparametric Flow Cytometry for T-Cell Analysis

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Allophycocyanin-conjugated (APC) mAbs to Foxp3 and CD62L; Phycoerythrin-conjugated (PE) mAbs to CD4, CD44, TNF-α, and LAP; PerCPCy5.5-conjugated mAbs anti-CD4, IFN-γ, and rat IgG2a isotype control from BD Biosciences (San Jose, CA, United States) were used as markers for T cells. PerCP-Cy5.5-CD19, FITC-CD25, and PE-conjugated anti IL-10 from Biolegend (San Diego, CA, United States). For surface antigen detection, cells were labeled with monoclonal antibodies for 30 min at 4°C. For intracellular labeling of cytokines and transcription factors, a fixation/permeabilization kit (e-Bioscience, San Diego, CA, United States) was used after this step. Samples were then incubated for 30 min with a solution containing the appropriate antibodies. After washing with PBS containing 0.5% FBS, samples were fixed with 3% paraformaldehyde for 30 min, washed and stored in PBS at 4°C. Cells were acquired using a FACSCanto II cytometer (Becton Dickinson, East Rutherford, NJ, United States) and data was analyzed by FlowJo software (Tree Star, Ashland, OR, United States). At least 30,000 events were acquired for each analysis. Gating strategies are detailed in Supplementary Material (Supplementary Figure S1).
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4

Bovine PD-1-Ig Blockade Assay

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The production of bovine PD-1 recombinant protein fused with bovine IgG Fc (PD-1-Ig) has been outlined in a previous report [36 (link)]. To confirm the blockade activity of Boch4G12 against the PD-1/PD-L1 interaction, PD-L1/EGFP cells were incubated with 4G12, Boch4G12, rat IgG2a isotype control (BD Bioscience), or bovine IgG1 isotype control (Bethyl Laboratories) in serial dilution (0, 0.32, 0.63, 1.25, 2.5, 5, and 10 μg/ml) at 37°C for 15 min. Biotinylated PD-1-Ig (2 μg/ml) was then added to each well without washing and reacted at 37°C for 30 min. After washing twice, the cells were stained by APC-conjugated streptavidin (BioLegend, San Diego, CA, USA) at room temperature for 30 min and binding of PD-1-Ig to PD-L1/EGFP was detected by flow cytometry, as described above.
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5

Measuring PD-L1 Occupancy by 4G12

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The binding of 4G12 to bovine PD-L1 on circulating IgM+ B cells was investigated to calculate the PD-L1 occupancy of 4G12 following inoculation. PBMCs isolated from #368 were pre-incubated with 10 μg/ml rat IgG2a isotype control (BD Bioscience) or 4G12, and then incubated with APC-conjugated anti-rat Ig (Beckman Coulter) at room temperature for 20 min. The same secondary antibody pre-incubated with IgG from rat serum (Sigma-Aldrich) at 37°C for 15 min was used as an unstained control. After washing twice, anti-IgM-PE/Cy7 (IL-A30; Bio-Rad) was reacted at room temperature for 20 min. The binding of the antibodies was then detected by flow cytometry, as described above. PD-L1 occupancy was estimated as the percentage of the in vivo binding (indicated as the number of cells positively stained by rat IgG2a isotype control) occurred at the total available binding sites (indicated as the number of cells positively stained by a saturated concentration of 4G12).
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6

Fluorescent anti-Siglec-F antibody labeling

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Monoclonal rat anti-mouse-Siglec-F antibody and a rat IgG2a isotype control were purchased from BD Biosciences (Heidelberg, Germany). Siglec-F antibody was custom-labeled by Squarix Biotechnology (Marl, Germany) with either Alexa Fluor 750 (dye to protein ratio 2.8) or Alexa Fluor 680 (dye to protein ratio 4.5) (Life Technologies GmbH, Darmstadt, Germany). These NIRF-labeled anti-Siglec-F antibodies are designated anti-SiglecF-750 and anti-SiglecF-680, respectively. IgG2a isotype control antibody was labeled with Alexa Fluor 750 (dye to protein ratio 3.1).
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7

Immunohistochemical Detection of F4/80+ Macrophages

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Formalin fixed paraffin embedded sections 4 μm thick were dewaxed in histolene and rehydrated. A heat mediated antigen retrieval step was performed in sodium citrate buffer (pH6). Free aldehydes were blocked with glycine and endogenous peroxidase quenched with 3% hydrogen peroxidase. Non-specific binding was blocked using TNB buffer (0.1 M Tris-HCl, pH 7.5, 0.15 M NaCl, 0.5% (w/v) blocking reagent, PerkinElmer FP1020). Sections were incubated with rat anti-mouse F4/80 (Clone BM8, eBioscience 13-4801) or a Rat IgG2a isotype control (BD Pharmingen 553927) at a dilution of 5 μg/ml. To visualise the distribution of F4/80, sections were incubated with ImmPRESSTM HRP anti-rat IgG (Vector Laboratories MP-7444) and 3,3′-diaminobenzidine (DAKO K3468) according to the manufacturer’s instructions. Sections were counterstained with haematoxylin before coverslipping.
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